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peer reviwed publications

2023

Monteiro, J.S., Almeida, M.S., Medeiros-Sarmento, P.S., Caldeira, C.F., Ramos, S.J., Oliveira, G., Valadares, R.B.S., Gastauer, M. DNA metabarcoding reveals compositional and functional diferences in fungal communities among Amazonian canga formations. 2023. Fungal Ecology. 61: 101209. PDF

2022

Brunes, T.O.; Pinto, F.C.S.; Taucce, P.P.G.; Santos, M.T.T.; Nascimento, L.B.; Carvalho, D.C.; Oliveira, G.; Vasconcelos, S.; Leite, F.S.F. Traditional taxonomy underestimates the number of species of amphibians diverging in the mountains of southeastern Brazil since the Miocene (Hylidae: Bokermannohyla). 2023. Systematics and Biodiversity. Accepted

 

Munk, P.; Brinch, C.; Møller, F.D.; Petersen, T.N.; Hendriksen, R.S.; Seyfarth, A.M.; Kjeldgaard, J.S.; Svendsen, C.A.; van Bunnik, B.; Berglund, F.; Global Sewage Surveillance Consortium, Larsson, D.G.J.; Koopmans, M.; Woolhouse, M.; Aarestrup, F.M. Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance. 2022. Nature Communications. 13:7251. PDF (as part of the Global Sewage Surveillance Consortium)

Frederico, T.D., Nancucheo, I., Santos, W.C.B., Oliveira R.R.M., Buzzi, D.C., Pires, E.S., Silva, P.M.P., Lucheta, A.R., Alves, J.O., Oliveira, G., Bitencourt, J.A.P. Comparison of two acidophilic sulfidogenic consortia for the treatment of acidic mine water. 2022. Frontiers in Bioengineering and Biotechnology. 2022. 10:1048412. PDF

 

Oliveira, R.S.M., Vasconcelos, S., Oliveira, G. SPLACE: a tool to automatically SPLit, Align and ConcatenatE genes for phylogenomic inference of several organisms. 2022. Frontiers in Bioinformatics. 2:10.3389/fbinf.2022.1074802. PDF 

 

Nunes, G.L., Alves, R.,Vasconcelos, S., Oliveira, G. Ferramentas moleculares para o estudo da fauna cavernícola. In 131-143, Zampaulo, R.A., Prous, X. Fauna cavernícola do Brasil. 2022. Rupestre. ISBN 978-65-87864-05-6 PDF

Maia, U.M. Santos-Júnior, J.E., Molina, M., Galaschi-Teixeira, J., Carvalho, A.T., Miranda, L., Imperatriz- Fonseca, V.L., Oliveira, G., Giannini, T. Evidence for morphological and genetic structuring of Plebeia flavocincta (Apidae: Meliponini) populations in Northeast Brazil. 2022. Front. Ecol. Evol. 10:1-9. 10.3389/fevo.2022.1057624. PDF

Nascimento, S.V., Herrera, H., Costa, P.H.O., Trindade, F.C., Costa, I.R.C., Caldeira, C.F., Gastauer, M., Ramos, S.J., Oliveira, G., Valadares, R.B.S. Molecular Mechanisms Underlying Mimosa acutistipula Success in Amazonian Rehabilitating Minelands. 2022. Int. J. Environ. Res. Public Health. 19:14441. PDF

Maia, U.M., Borges, R.C., Santos-Júnior, J.E., Dias, V.H.P., Carvalho, A.T., Imperatriz-Fonseca, V.L., Oliveira, G., Giannini, T.C. "Species redescription and nest architecture of Plebeia flavocincta (Hymenoptera: Apidae: Meliponini). 2022. Apidologie. 53:63. PDF 

Bitencourt, J., Scholte, L., Oliveira, R.R., Morais, D.K., Nunes, G., Ñancucheo, I., Valadares, R., Holmes, D., Johnson, D., Alves, R., Oliveira, G. Draft Genome Sequence of a Novel Moderately Thermophilic, Iron- and Sulfur-Oxidizing Firmicute strain Y002, Isolated from an Extremely Acidic Geothermal Environment. 2022. Microbiology Resource Announcements. 11(6):1-3. PDF

Oliveira, R.R.M., Negri, T.C., Nunes, G., Medeiros, I., Araújo, G., Silva, F.O., Souza, J.E.S., Alves, R., Oliveira, G. PipeCoV: a pipeline for SARS-CoV-2 genome assembly, annotation and variant identification. 2022. PeerJ 10:e13300. PDF

 

Fonseca, P.L.C., Skaltsas, D., Silva, F.F., Kato, R.B., Castro, G.M., García, G.J.Y., Quintanilha-Peixoto, G., Mendes, Pereira, T., Carmo, A.O., Aguiar, E.R.G.R., Carvalho, D.S., Costa-Rezende, D.H., Drechsler-Santos, E.R., Badotti, F., Ferreira-Silva, A., Oliveira, G., Chaverri, P., Vaz, A.B.M., Góes-Neto, A. An integrative view of phylosphere mycobiome of native rubber trees in the Brazilian Amazon. 2022. Journal of Fungi. Accepted.

 

Laux, M., Oliveira, R.R.M., Vasconcelos, S., Pires, E.S., Lima, T.G.L., Pastore, M., Nunes, G.L., Alves, R., Oliveira, G. New plastomes of eight Ipomoea species and four putative hybrids from Eastern Amazon. 2022. PLoS One. 17(3): e0265449. PDF

Nascimento, S.V., Costa, P.H.O., Echeverria, H.A., Caldeira, C.F., Gastauer, M., Ramos, S.J., Oliveira, G., Valadares, R.B.S. Proteomic profiling and rhizosphere-associated microbial communities reveal adaptive mechanisms of Dioclea apurensis Kunth in eastern Amazon's rehabilitating minelands. 2022 Plants. 11(5):712. PDF

Dias, M.C., Caldeira, C., Gastaure, M., Ramos, S., Oliveira, G. Cross-species transcriptomes reveal species-specific and shared molecular adaptations for plants development on iron-rich rocky outcrops soils. 2022. BMC Genomics. 23:313. PDF.

Platt II, R.N., Clec'h, W.L., Chevalier, F.D., McDew-White, M., LoVerde, P.T., Assis, R.R., Oliveira, G., Kinunghi, S., Djirmay, A.G., Steinauer, M.L., Gouvras, A., Rabone, M., Webster, B.L., Webster, J., Emery, A., Rollinson, D., Anderson, T.J.C. Genomic analysis of a parasite invasion: colonization of the New World by the blood fluke, Schistosoma mansoni. Molecular Ecology. 2022. 31(8): 2242-2263. PDF 

Scholz, A.H., Freitag, J., Lyal, C.H.C., Sara, R., Cepeda, M.L., Cancio, I., Sett, S., Hufton, A., Abebaw, Y., Bansal, K.,  Benbouza, H., Boga, H.I., Brisse, S., Bruford, M., Clissold, H., Cochrane, G., Coddington, J., Deletoille, A.C., García-Cardona, F., Hamer, M., Ortiz, R.H., Miano, D.W., Nicholson, D., Oliveira, G., Bravo, C.O., Rohden, F., Seberg, O., Segelbacher, G., Shouche, Y., Sierra, A., Silva, J., Silva, M., Suzuki, M., Tesfaye, K., Tiambo, C.K., Tolley, K.A., Varshney, R., Zambrano, M.M., Overmann, J. A practical multilateral framework for digital sequence information that reinforces biodiversity conservation. 2022, Nat Commun 13, 1086. PDF

 

Gales, S.M., Ready, J.S., Sabaj, M.H., Bernt, M.J., Silva, D.J.F., Oliveira, C., Oliveira, G., Sales, J.B.L. Molecular diversity and historical phylogeography of the widespread genus Mastiglanis (Siluriformes: Heptapteridae) based on palaeogeographical events in South America. 2021. Biological Journal of the Linnean Society. 135 (2):322-335. PDF

 

Farias, J.C., Vasconcelos, S., Oliveira, G., Santos, N., Sotero-Caio, C.G. Complete mitochondrial genome of the greater round-eared bat, Tonatia bidens (Chiroptera: Phyllostomidae) from Brazil and phylogenetic relationships within the family. 2022. Mitochondrial DNA Part B: Resources. 7:2, 323-325. PDF

Ribeiro, P.G., Martins, G.C., Gastauer, M., Silva Junior, E.D., Santos, D.C., Caldeira Júnior, C.F., Cavalcante, R.B.L., Santos, D.S., Carneiro, M.A.C., Valadares, R.B.S., Nascimento Junior, W.R., Oliveira, G., Souza Filho, P.W.M., Ramos, S.J. Spectral and soil quality index for monitoring environmental rehabilitation and soil carbon stock in an Amazonian sandstone mine. 2022. Sustainability. 14(2), 597. PDF

 

2021

 

Oliveira R.R.M., Silva R., Nunes G.L., Oliveira G. (2021) PIMBA: A PIpeline for MetaBarcoding Analysis. In: Stadler P.F., Walter M.E.M.T., Hernandez-Rosales M., Brigido M.M. (eds) Advances in Bioinformatics and Computational Biology. BSB 2021. Lecture Notes in Computer Science, vol 13063. Springer, Cham. PDF

Costa, P.H.O., Nascimento, S.V., Herrera, H., Gastauer, M., Ramos, S.J., Caldeira, C.F., Oliveira, G., Valadares, R.B.S., Non-specific interactions of rhizospheric microbial communities support the establishment of Mimosa acutistipula var. férrea in an Amazon rehabilitating mineland. 2021. Processes. 9:2079. PDF

Costa, P.H.O., Nascimento, S.V., Herrera, H., Gastauer, M., Ramos, S.J., Caldeira, C.F., Oliveira, G., Valadares, R.B.S., Non-specific interactions of rhizospheric microbial communities support the establishment of Mimosa acutistipula var. férrea in an Amazon rehabilitating mineland. 2021. Processes. 9:2079. PDF

 

Barbosa-Silva, R., Coutinho, T.S., Vasconcelos, S., Silva, D.F., Oliveira, G., Zappi, D. Preliminary placement and new records of an overlooked Amazonian tree Christiana mennegae (Malvaceae). 2021. Peer J. 2021. 9:e12244. PDF

Aguiar, L.M.S., Rocha, I.D.B., Nunes, G.L., Oliveira, G., Vasconcelos, S., Pires, E., Frizzas, M.R., Togni, M.R. Going out for dinner - The consumption of agriculture pests by bats in urban areas. 2021. PLoS One. 16(10): e0258066. PDF

Matosinho, C.G.R., Silva, M.V.G.B., Rosse, I., Fonseca, P., Silva, F., Peixoto, M.G.C.D., Salim, A., Arbex, W., Machado, M., Verneque, R., Martins, M., Oliveira, G., Santos, F.G., Carvalho, M.R., Pires, D., Carvalho, M.R. Identification and in silico characterization of structural and functional impacts of genetic variants in milk protein genes in the zebu breeds Guzerat and Gyr. 2021. Tropical Animal Health and Production. 53(6):524. PDF

Acosta, A.L., Tavares, V., Oliveira, G., Trevelin, L.C., Alves, R. Marques, N., Giannini, T.C. Biodiversity 4.0: Standardizing biodiversity protocols for the private sector. Biodiversity Information Science and Standards. 2021. 5: e75652. PDF

 

Trindade, F.C., Gastauer, M., Ramos, S.J., Caldeira, C.F., Araújo, J.F., Oliveira, G., Valadares, R.B.S. Soil metaproteomics as a tool for envivonmental monitoring of minelands. Forests. 2021. 12:1158. PDF

 

Vasconcelos, S., Nunes, G.L., Dias, M.C., Lima, J.L.R., Lima, T.G.L., Oliveira, R.M., Pires, E.S., Valadares, R.B.S., Alves, R., Watanabe, M.T.C., Zappi, D.C., Hiura, A.L., Pastore, M., Vasconcelos, L.V., Mota, N.F.O., Viana, P.L., Gil, A.S.B., Simões, A.O., Imperatriz-Fonseca, V.L., Harley, R.H., Giulietti, A.M., Oliveira, G. Unravelling the plant diversity of the Amazonian canga through DNA barcoding. Ecology and Evolution. 2021.11(9): 13348-13362.  PDF

 

Gastaurer, M. Sarmento, P.S.M., Caldeira, C., Castro, AF., Ramos, S., Medeiros, P.S., Trevelin, L., Jaffe, R., Rosa, G.A., Carneiro, M.A.C., Valadares, R.B., Oliveira, G., Souza, P.M. Shannon tree diversity is a surrogate for mineland rehabilitation status. Ecological Indicators. 2021. 130: 108100.  PDF

 

Caldeira, C.F., Lopes, A.V.S., Aguiar, K.C., Ferreira, A.L., Araújo, J.V.S., Gomes, V.M.S., Zandonadi, D.B., Abranches, C.b., Ramos, S.J., Gastauer, M., Campos, N.V., Gestinari, L.M.S., Prado, L.A., Santos, F.M.G., Martins, R.L., Estevers, F.A., Oliveira, G., Santos, M.P. Distinct reproductive strategy of two endemic Amazonian quillworts. 2021. Diversity. 13:348. PDF

 

Ras, V., Carvajal-Lopez, P., Gopalasingam, P., Matimba, A., Chauke, P., Mulder, N., Guerfali, F.Z., Del Angel, V.D., Reyes, A., Oliveira, G., De Las Rivas, J., Cristancho, M. Challenges and Considerations for Delivering Bioinformatics Training in LMICs: Perspectives from Pan-African and Latin American Bioinformatics Networks. 2021. Frontiers in Education. 6:278. PDF

Moore, B., Carvajal-López, P., Chauke, P.A., Cristancho, M., Del Angel, V.D., Fernandez-Valverde, S.L., Gopalasingam, P., Ghouila, A., Guerfali, F.Z., Matimba, A., Morgan, S.L., Oliveira, G., Ras, V., Reyes, A., De Las Rivas, J., Mulder, N. Ten simple rules for organising a bioinformatics training course in a low-middle income country. PLoS Computational Biology. 2021. 17(8): e10092180. PDF

Dalapicolla, J., Alves, R., Jaffé, R., Vasconcelos, S., Pires, E.S., Nunes, G.L., Pereira, J.B.S., Guimarães, J.T.F., Dias, M.C., Fernandes, T.N., Scherer, D., Santos, F.M.G., Castilho, A., Santos, M.P., Calderón, E.N., Martins, R.L., Fonseca, R.N., Esteves, F.A., Caldeira, C.F., Oliveira, G. Conservation implications of genetic structure in the narrowest endemic quillwort from the Eastern Amazon. Ecology and Evolution. 2021;11:10119-10132. PDF

Dillon, M.R., Bolyen, E., Adamov, A., Belk, A., Borsom, E., Burcham, Z., Debelius, J.W., Deel, H., Emmons, A., Estaki, M., Herman, C., Keefe, C.R., Morton, J.T., Oliveira, R.R.M., Sanchez, A., Simard, A., Vázquez-Baeza, Y., Ziemski, M., Miwa, H.E., Kerere, T.A., Coote, C., Bonneau, R., Knight, R., Oliveira, G., Gopalasingam, P., Kaehler, B.D., Cope, E.K., Metcalf, J.L., Robeson II, M.S., Bokulich, N.A., Caporaso, J.G. Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. 2021. PloS Comp Biol. 17: e1009056. PDF

Pereira, J., Prado, J., Harley, A.M.G., Vasconcelos, S., Caldeira, C., Watanabe, M., Sotero, D., Oliveira, R.R.O., Pires, E., Oliveira, G. Plastome-based phylogenomics elucidate relationships in rare Isoëtes species groups from the Neotropics. 2021. Molecular Phylogenetics and Evolution. 161, 107177. PDF

Ribas, T.F.A, Sales, J.B.L., de Boer, H., Anmarkrud, J.A., Oliveira, R.R.M., Laux, M., Rosa, F.A.S., Oliveira, G., Postuma, F.A., Gasalla, M.A., Ready, J.S. Unexpected diversity in the diet of Doryteuthis sanpaulensis (Brakoniecki, 1984) (Mollusca: Cephalopoda) from the southern Brazilian sardine fishery identified by metabarcoding. 2121. Fisheries Research. 238:105936. PDF

Vaca, H.R., Celentano, A.M., Toscanini, A., Heimburg, T., Ghazy, E., Zeyen, P., Hauser, A., OliveiraG., Elissondo, M.C., Jung, M., Sippl, W., Camicia, F., Rosenzvit, M. The potential for histone deacetylase (HDAC) inhibitors as cestocidal drugs. 2121. PLoS NTD. 15(3). e0009226. PDF

Pereira, J.B.S., Giulietti, A.M., Pires, E.S., Laux, M., Watanabe, M.C.T, Oliveira, R.R.M., Vasconcelos, S., Oliveira, G. Chloroplast Genomes of key species shed light on the evolution of the ancient genus Isoetes. Journal of Systematics and Evolution. 2021. 59(3):429-441 PDF

Vasconcelos, S., Oliveira, R., Pires, E., Pietrobon, T., Prous, X., Asenjo, A., Oliveira, G. Complete mitochondrial genome of a cave dwelling Desmopachria (Insecta: Coleoptera: Dytiscidae) from the Eastern Amazon. 2021. Mitochondrial DNA Part B: Resources. 6(2): 415–417. PDF

2020

Chagas, G.C.A., Espírito-Santo, J.C.A., Ferreira, N.R., Marques-da-Silva, S.H., Oliveira, G., Vasconcelos, S., Almeida, S.F.O., Silva, L.R.C., Gobira, R.M., Figueiredo, H.M., Lopes, A.S. Yeast isolation and identification during on-farm cocoa natural fermentation in a highly producer region in northern Brazil2020. Scientia Plena. 16(12):1-10. PDF

 

Lynggaard, C., Yu, D., Oliveira, G., Caldeira, C., Ramos, S., Ellegaard, M.R., Gilbert, M.T., Gastauer, M., Bohmann, K. DNA-based arthropod diversity assessment in Amazonian iron mine lands show ecological succession towards undisturbed reference sites.  Frontiers Ecology And Evolution. 2020. 8:590976. PDF

 

Santos, M.P., Araujo, J.V.S.R., Lopes, A.V.S, Vettorazzi, J.C.F., Boechat, M.S.B., Arêdes, F.A., Campos, N.V., Calderon, E.N., Santos, F.M.G., Fernandes, T.N., da Fonseca, R.N., Pereira, M.G., Oliveira, G., Zandonadi, D.B., Martins, R., Esteves, F.A. 2020. The genetic diversity and population structure of two endemic Amazonian quillwort (Isoetes L.) species. PeerJ. 2020 8:e10274 PDF

Nunes, G., Oliveira, R., Pires, E., Pietrobon, T., Prous, X., Oliveira, G. Complete mitochondrial genome of Glomeridesmus spelaeus (Diplopoda, Glomeridesmida), a troglobitic species from iron-ore caves in Eastern Amazon. Mitochondrial DNA Part B: Resources. 2020. 5(3):3290-3291. PDF

Nieuwenhuijse, D.f., Munnink, B.B.O., Phan, M.V.T., The Global Sewage Surveillance Project Consortium, Munk, P., Venkatakrishnan, S., Aarestrup, F.M., Cotton, M., Koopmans, M.P.G. Setting a baseline for global urban virome surveillance in sewage. Scientific Reports. 2020. 10, 13748 (2020). https://doi.org/10.1038/s41598-020-69869-0 PDF

Gagen, E., Levett, A., Paz, A., Bostelmann, H., Valadares, R.B.S., Bittencourt, J.A.P., Gastauer, M., Nunes, G.L., Oliveira, G., Vasconcelos, P.M., Tyson, G.W., Southam, G. Accelerating microbial iron cycling promotes re-cementation of surface crusts in iron ore regions. Microbial Biotechnology. 2020. 13(6):1960-1971. https://doi.org/10.1111/1751-7915.13646. PDF

Maia, U., Carvalho, A., Imperatriz-Fonseca, V.L., Oliveria, G., Gianninni, T.C. Climate-induced Distribution Dynamics of Plebeia flavocincta, a Stingless Bee from Brazilian Tropical Dry Forests. Ecology and Evolution. 2020; 00: 1– 9. https://doi.org/10.1002/ece3.6674 PDF

Trindade, F. C., Ramos, S.J., Gastauer, M., Saraiva, A.M.M., Caldeira, C.F., Oliveira, G., Valadares, R.B.S. Metaproteomic analysis from a ferruginous rocky outcrop soil from Southeastern Brazil. Pedobiologia Journal of Soil Ecology. 2020. 81-82, 150664. PDF

 

Zappi, D.C., Vasconcelos, S., Watanabe, M.T.C., Oliveira, G., Oliveira, R.R.M.,  Pires, E.S., Harley, R.M., Giulietti, A.M. The phylogenetic placement of a new species of Belemia in Nyctaginaceae, and the first plastome description for the genus. Systematics and Biodiversity. 2020. 18(4):328-337. doi.org/10.1080/14772000.2020.1759728 PDF

Gastauer, M., Siqueira, J.O., Caldeira, C., Carneiro, M.A.C., Louzeiro, F., Pires, E., Vera, M., Jaffer, R., Ramos, S., Oliveira, G., Souza, P.M. Integrating environmental variables by multivariate ordination enables the reliable estimation of mineland rehabilitation status. Journal of Environmental Management. 2020. 256:109894. PDF

2019

 

Gonçalves-Oliveira, R., Ximenes, A.F., Vasconcelos, S., Leme, E., Oliveira, A.R., Carvalho-Filho, N., Oliveira, G., Camos, J.M.S., Brasileiro-Vidal, A.C., Viccini, L.F., Benko-Iseppon, A.M. Genome Size and Karyotype Diversity in Hohenbergia (Bromeliaceae, Bromelioideae). Biological Journal of the Linnean Society. 2019. Biological Journal of the Linnean Society. 2019. 192(4):900-909. PDF

Carvalho, C.S., Lanes, E.C.M., Silva, A.R., Caldeira, C.F., Carvalho-Filho, N., Gastauer, M., Imperatriz-Fonseca, V.L., Nascimento, W., Oliveira, G., Siqueira, J.O., Viana, P.L., Jaffe. R. Habitat loss does not always entail negative genetic consequences. 2019. Frontiers in Genetics. 10:1101. PDF 

Ramos, S.J., Gastaure, M., Mitre, S.K., Caldeira, C.F., Silva, J.R., Furtini Neto, A.E., Oliveira, G., Souza-Filho, P.W.M., Siqueira, J.O. Plant Growth and nutriente use efficiency of two native Fabacea species for mineland revegetation in the eastern Amazon. Journal of Forestry Research. 2019. doi.org/10.1007/s11676-019-01004-w PDF

Gava, S., Tavares, N.C., Falcone, F.H., Oliveira, G., Mourão, M.M. Profiling transcriptional regulation and functional roles of Schistosoma mansoni c-Jun N-terminal kinase. 2019. Frontiers in Genetics. 10:1036. PDF

 

Lynggaard, C., Nielsen, M., Santos‐Bay, L., Gastauer, M., Oliveira, G., Bohmann, K. Vertebrate diversity revealed by metabarcoding of bulk arthropod samples from tropical forests. 2019. Environmental DNA. 1:329–341. PDF

Lemos, L.N., Medeiros, J.D., Dini-Andreote, F., Fernandes, G.R., Varani, A.M., Oliveira, G., Pylro, V.S. Genomic signatures and co-occurrence patterns of the ultra-small Saccharimonadia (CPR/Patescibacteria phylum) suggest a symbiotic lifestyle. 2019. Molecular Ecology. 28(18):4259-4271. PDF

Maldonado, L.L., Arrabal, J.P., Rosenzvit, M.C., Oliveira, G., Kamenetzky, L. Revisiting the phylogenetic history of helminthes through genomics, the case of the new Echinococcus oligarthrus genome. Frontiers in Genetics. 2019. Frontiers in Genetics. 708. PDF

 

Giannattasio-Ferraz, S., Laguardia-Nascimento, M., Gasparini, M.R., Leite, L.R., Araujo, F.M.G., Salim, A.C.M., Oliveira, A.P., Nicoli, J.R., Fonseca, F.G., Oliveira, G., Barbosa-Stancioli, E.F. 2019. A common vaginal microbiota composition among breeds of Bos taurus indicus (Gyr and Nellore). Brazilian Journal of Microbiology. 50(4):1115-1124. https://doi.org/10.1007/s42770-019-00120-3. PDF

Darnet, S., Dragalzew, A.C., Amaral, D.B., Sousa, J.F., Thompson, A.W., Cass, A.N., Lorena, J., Pires, E.S., Costa, C.M., Sousa, M.P., Fröbisch, N.B., Oliveira, G., Schneider, P.N., Davis, M.C., Braasch, I., Schneider, I. Deep evolutionary origin of limb and fin regeneration. 2019. PNAS. 201900475. PDF.

Araújo, J.A., Ferreira, N.R., Silva, S.H.M., Oliveira, G., Monteiro, R.C., Alves, Y.F.M., Lopes, A.S.  Filamentous Fungal Diversity from Natural Fermentation of the Amazonian Cocoa Beans and Microbial Enzymes Activities. 2019. Annals of Microbiology. 1-13. PDF

Jaffé, R., Veiga, J.C., Alves, R., Andrade, S., Arias, M.C., Bonatti, V., Carvalho, A.T., Castro, M., Contrera, F.A.L., Francoy, T.M., Freitas, B.M., Giannini, T.C., Lanes, E.C.M., Martins, C.F., Oliveira, G., Saraiva, A.M., Souza, B.A., Imperatriz-Fonseca, V.L. Landscape genomics to the rescue of a tropical bee threatened by habitat loss and climate change. 2019. Evolutionary Applications. 12:1164-1177. Evolutionary Applications. 1-14. PDF

 

Oliveira, G., et al. (2018). Série Fiocruz. Coleção Saúde, Ambiente e Sustentabilidade. Biodiversidade e Saúde. Complexidades, construções e desafios. Editora Fiocruz, Rio de Janeiro, RJ. ISBN: 978-85-8110-064-7  PDF

 

Gagen, E.J., Levetta, A., Paza, A., Gastauer, M., Caldeira, C.F., Valadares, R.B.S., Bitencourt, J.A.P., Alves, R., Oliveira, G., Siqueira, J.O., Vasconcelos, P.M., Southam, G. Biogeochemical processes in canga ecosystems: Armoring of iron ore against erosion and importance in iron duricrust restoration in Brazil. 2019. Ore Geology Reviews. 107:573-586. PDF

 

Basika, T., Paludo, G.P., Araujo, F.M., Salim, A.C., Pais, F., Maldonado, L., Macchiaroli, N., Camargo de Lima, J., Rosenzvit, M., Oliveira, G., Kamenetzky, L., Ferreira, H.B. Transcriptomic profile of two developmental stages of the cestode parasite Mesocestoides corti. 2019. Molecular and Biochemical Parasitology. 229, 35-46. PDF

 

Ñancucheo, I., Oliveira, G., Lopes, M., Johnson, D.B. Reductive dissolution as a pretreatment for recalcitrante rare-earth phosphate minerals associated with lateritic ores. 2019. Minerals. 9(3):136. PDF

 

Holguín, A.V., Cárdenas, P., Rabelo, L., Prada-Peñaranda, C., Buitrago, C., Clavijo, V., Oliveira, G., Leekitcharoenphon, P., Møller, F., Vives, M. Host resistance, genomics and population dynamics in a Salmonella enteriditis and Phage system. 2019. Viruses. 11(2), 188. PDF

Gastauer, M., Vera, M.P.O., Souza, K.P., Pires, E.S., Alves, R., Caldeira, C.F., Ramos, S.J., Oliveira, G. A metagenomic survey of soil microbial communities along a rehabilitation chronosequence after iron ore mining. 2019. Nature Scientific Data. 6. PDF

 

Silva, P.M.P., Lucheta, A.R., Bitencourt, J.A.P., Carmo, A. L.V., Cuevas, I.P.N., Siqueira, J.O., Oliveira, G., Alves, J.O. Covellite (CuS) production from a real acid mine drainage treated with biogenic H2S. 2019. Metals. 9(2), 206-215. PDF

 

Cuesta-Astroz, Y., Santos, A., Oliveira, G., Jensen, L.J. Analysis of predicted host–parasite interactomes reveals commonalities and specificities related to parasitic lifestyle and tissues tropism. 2019. Frontiers in Immunolgy. Accepted.

 

Trevelin, L.C., Gastauer, M., Prous, X., Nicácio, G., Zampaulo, R., Brandi, I., Oliveira, G., Siqueira, J.O., Jaffé, R. Biodiversity surrogates in Amazonian iron cave ecosystems. 2019. Ecological Indicators. 101, 813-820. PDF

 

Hendriksen, R.S., Munk, P., Njage, P., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Pedersen, S.K., Kjeldgaard, J., Kaas, R.S., Clausen, P.T.L.C., Vogt, J.K., Leekitcharoenphon, P., van de Schans, M.G.M., Zuidema, T., Husman, A.M.R., Rasmussen, S., Petersen, B., Oliveira, G., the Global Sewage Surveillance project consortium, Amid, C., Cochrane, G., Sicheritz-Ponten, T., Schmitt, H., Alvarez, J.R.M., Aidara-Kane, A., Pamp, S.J., Lund, O., Hald, T., Woolhouse, M., Koopmans, M., Vigre, H., Petersen, T.N., Aarestrup, F.M. Global monitoring of antimicrobial resistance based on human sewage. 2019. Nature Communications. 10, Article number: 1124. PDF

 

Avelar, L.G.A., Gava, S.G., Neves, R.H., Silva, M.C.S., Araújo, N., Tavares, N.C., Khal, A.E., Matos, A.C.A., Machado-Silva, J.R., Oliveira, G., Mourão, M.M. Smp38 MAP kinase regulation in Schistosoma mansoni: roles in survival, oviposition and protection against oxidative stress. 2019. Frontiers in Immunology. 4:1, 420-422. PDF

 

Dias, M., Oliveira, R.R.M., Vasconcelos, S., Pires, E.S., Pietrobon, T., Prous, X., Oliveira, G. Complete mitochondrial genome of a troglophile Cydnidae (Hemiptera). 2018. Mitochondrial DNA Part B: Resources. 4:1, 420-422. PDF

 

Ramos, S.J., Gastauer, M., Mitre, S.K., Caldeira, C.F., Silva, J.R., Furtini Neto, A.E., Oliveira, G., Souza-Filho, P.W.M., Siqueira, J.O. Growth and nutrient response of native plants for iron mining rehabilitation in Amazon Forest. 2018. Journal of Forestry Research. Accepted.

 

Oliveira, R.R.M., Vasconcelos, S., Pires, E.S., Prous, X., Oliveira, G. Complete mitochondrial genomes of three troglophile cave spiders (Mesabolivar, Pholcidae). 2019. Mitochondrial DNA Part B, 4:1, 251-252. PDF

 

 

2013 to 2018

1987 to 2012

 

 

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