peer reviwed publications

 

2019

Gonçalves-Oliveira, R., Ximenes, A.F., Vasconcelos, S., Leme, E., Oliveira, A.R., Carvalho-Filho, N., Oliveira, G., Camos, J.M.S., Brasileiro-Vidal, A.C., Viccini, L.F., Benko-Iseppon, A.M. Genome Size and Karyotype Diversity in Hohenbergia (Bromeliaceae, Bromelioideae). Biological Journal of the Linnean Society. 2019. Accepted.

Carvalho, C.S., Lanes, E.C.M., Silva, A.R., Caldeira, C.F., Carvalho-Filho, N., Gastauer, M., Imperatriz-Fonseca, V.L., Nascimento, W., Oliveira, G., Siqueira, J.O., Viana, P.L., Jaffe. R. Habitat loss does not always entail negative genetic consequences. 2019. Frontiers in Genetics. 10:1101. PDF 

Gava, S., Tavares, N.C., Falcone, F.H., Oliveira, G., Mourão, M.M. Profiling transcriptional regulation and functional roles of Schistosoma mansoni c-Jun N-terminal kinase. Frontiers in Genetics. Accepted.

 

Lynggaard, C., Nielsen, M., Santos‐Bay, L., Gastauer, M., Oliveira, G., Bohmann, K. Vertebrate diversity revealed by metabarcoding of bulk arthropod samples from tropical forests. 2019. Environmental DNA. 1:329–341. PDF

Lemos, L.N., Medeiros, J.D., Dini-Andreote, F., Fernandes, G.R., Varani, A.M., Oliveira, G., Pylro, V.S. Genomic signatures and co-occurrence patterns of the ultra-small Saccharimonadia (CPR/Patescibacteria phylum) suggest a symbiotic lifestyle. 2019. Molecular Ecology. 28(18):4259-4271. PDF

Maldonado, L.L., Arrabal, J.P., Rosenzvit, M.C., Oliveira, G., Kamenetzky, L. Revisiting the phylogenetic history of helminthes through genomics, the case of the new Echinococcus oligarthrus genome. Frontiers in Genetics. 2019. Frontiers in Genetics. 708. PDF

 

Giannattasio-Ferraz, S., Laguardia-Nascimento, M., Gasparini, M.R., Leite, L.R., Araujo, F.M.G., Salim, A.C.M., Oliveira, A.P., Nicoli, J.R., Fonseca, F.G., Oliveira, G., Barbosa-Stancioli, E.F. 2019. A common vaginal microbiota composition among breeds of Bos taurus indicus (Gyr and Nellore). Brazilian Journal of Microbiology. https://doi.org/10.1007/s42770-019-00120-3. PDF

Darnet, S., Dragalzew, A.C., Amaral, D.B., Sousa, J.F., Thompson, A.W., Cass, A.N., Lorena, J., Pires, E.S., Costa, C.M., Sousa, M.P., Fröbisch, N.B., Oliveira, G., Schneider, P.N., Davis, M.C., Braasch, I., Schneider, I. Deep evolutionary origin of limb and fin regeneration. 2019. PNAS. 201900475. PDF.

Araújo, J.A., Ferreira, N.R., Silva, S.H.M., Oliveira, G., Monteiro, R.C., Alves, Y.F.M., Lopes, A.S.  Filamentous Fungal Diversity from Natural Fermentation of the Amazonian Cocoa Beans and Microbial Enzymes Activities. 2019. Annals of Microbiology. 1-13. PDF

Jaffé, R., Veiga, J.C., Alves, R., Andrade, S., Arias, M.C., Bonatti, V., Carvalho, A.T., Castro, M., Contrera, F.A.L., Francoy, T.M., Freitas, B.M., Giannini, T.C., Lanes, E.C.M., Martins, C.F., Oliveira, G., Saraiva, A.M., Souza, B.A., Imperatriz-Fonseca, V.L. Landscape genomics to the rescue of a tropical bee threatened by habitat loss and climate change. 2019. Evolutionary Applications. 12:1164-1177. Evolutionary Applications. 1-14. PDF

 

Oliveira, G., et al. (2018). Série Fiocruz. Coleção Saúde, Ambiente e Sustentabilidade. Biodiversidade e Saúde. Complexidades, construções e desafios. Editora Fiocruz, Rio de Janeiro, RJ. ISBN: 978-85-8110-064-7  PDF

 

Gagen, E.J., Levetta, A., Paza, A., Gastauer, M., Caldeira, C.F., Valadares, R.B.S., Bitencourt, J.A.P., Alves, R., Oliveira, G., Siqueira, J.O., Vasconcelos, P.M., Southam, G. Biogeochemical processes in canga ecosystems: Armoring of iron ore against erosion and importance in iron duricrust restoration in Brazil. 2019. Ore Geology Reviews. 107:573-586. PDF

 

Basika, T., Paludo, G.P., Araujo, F.M., Salim, A.C., Pais, F., Maldonado, L., Macchiaroli, N., Camargo de Lima, J., Rosenzvit, M., Oliveira, G., Kamenetzky, L., Ferreira, H.B. Transcriptomic profile of two developmental stages of the cestode parasite Mesocestoides corti. 2019. Molecular and Biochemical Parasitology. 229, 35-46. PDF

 

Ñancucheo, I., Oliveira, G., Lopes, M., Johnson, D.B. Reductive dissolution as a pretreatment for recalcitrante rare-earth phosphate minerals associated with lateritic ores. 2019. Minerals. 9(3):136. PDF

 

Holguín, A.V., Cárdenas, P., Rabelo, L., Prada-Peñaranda, C., Buitrago, C., Clavijo, V., Oliveira, G., Leekitcharoenphon, P., Møller, F., Vives, M. Host resistance, genomics and population dynamics in a Salmonella enteriditis and Phage system. 2019. Viruses. 11(2), 188. PDF

Gastauer, M., Vera, M.P.O., Souza, K.P., Pires, E.S., Alves, R., Caldeira, C.F., Ramos, S.J., Oliveira, G. A metagenomic survey of soil microbial communities along a rehabilitation chronosequence after iron ore mining. 2019. Nature Scientific Data. 6. PDF

 

Silva, P.M.P., Lucheta, A.R., Bitencourt, J.A.P., Carmo, A. L.V., Cuevas, I.P.N., Siqueira, J.O., Oliveira, G., Alves, J.O. Covellite (CuS) production from a real acid mine drainage treated with biogenic H2S. 2019. Metals. 9(2), 206-215. PDF

 

Cuesta-Astroz, Y., Santos, A., Oliveira, G., Jensen, L.J. Analysis of predicted host–parasite interactomes reveals commonalities and specificities related to parasitic lifestyle and tissues tropism. 2019. Frontiers in Immunolgy. Accepted.

 

Trevelin, L.C., Gastauer, M., Prous, X., Nicácio, G., Zampaulo, R., Brandi, I., Oliveira, G., Siqueira, J.O., Jaffé, R. Biodiversity surrogates in Amazonian iron cave ecosystems. 2019. Ecological Indicators. 101, 813-820. PDF

 

Hendriksen, R.S., Munk, P., Njage, P., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Pedersen, S.K., Kjeldgaard, J., Kaas, R.S., Clausen, P.T.L.C., Vogt, J.K., Leekitcharoenphon, P., van de Schans, M.G.M., Zuidema, T., Husman, A.M.R., Rasmussen, S., Petersen, B., Oliveira, G., the Global Sewage Surveillance project consortium, Amid, C., Cochrane, G., Sicheritz-Ponten, T., Schmitt, H., Alvarez, J.R.M., Aidara-Kane, A., Pamp, S.J., Lund, O., Hald, T., Woolhouse, M., Koopmans, M., Vigre, H., Petersen, T.N., Aarestrup, F.M. Global monitoring of antimicrobial resistance based on human sewage. 2019. Nature Communications. 10, Article number: 1124. PDF

 

Avelar, L.G.A., Gava, S.G., Neves, R.H., Silva, M.C.S., Araújo, N., Tavares, N.C., Khal, A.E., Matos, A.C.A., Machado-Silva, J.R., Oliveira, G., Mourão, M.M. Smp38 MAP kinase regulation in Schistosoma mansoni: roles in survival, oviposition and protection against oxidative stress. 2019. Frontiers in Immunology. 4:1, 420-422. PDF

 

Dias, M., Oliveira, R.R.M., Vasconcelos, S., Pires, E.S., Pietrobon, T., Prous, X., Oliveira, G. Complete mitochondrial genome of a troglophile Cydnidae (Hemiptera). 2018. Mitochondrial DNA Part B: Resources. Accepted.

 

Ramos, S.J., Gastauer, M., Mitre, S.K., Caldeira, C.F., Silva, J.R., Furtini Neto, A.E., Oliveira, G., Souza-Filho, P.W.M., Siqueira, J.O. Growth and nutrient response of native plants for iron mining rehabilitation in Amazon Forest. 2018. Journal of Forestry Research. Accepted.

 

Oliveira, R.R.M., Vasconcelos, S., Pires, E.S., Prous, X., Oliveira, G. Complete mitochondrial genomes of three troglophile cave spiders (Mesabolivar, Pholcidae). 2019. Mitochondrial DNA Part B, 4:1, 251-252. PDF

 

2018
 

Cuesta-Astroz Y., Oliveira G. (2018) Computational and Experimental Approaches to Predict Host–Parasite Protein–Protein Interactions. In: von Stechow L., Santos Delgado A. (eds) Computational Cell Biology. Methods in Molecular Biology, vol 1819. Humana Press, New York, NY. Link

 

Vaz, A., Fonseca, P., Badotti, F., Skaltsas, D., Tomé, L.M., Silva, A., Cunha, M., Soares, M, Santos, V., Oliveira, G., Chaverri, P., Góes-Neto, A. A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon. 2018. Scientific Reports. 8:16151. DOI:10.1038/s41598-018-34619-w PDF

 

Oliveira, H.O., Castro, G.L.S., Correa, L.O., Silvestre, W.V.D., Nascimento, S.V., Valadares, R.B.S., Oliveira, G., Santos, R.I.N., Festucci-Buselli, R.A., Pinheiro, H.A. Coupling physiological analysis with proteomic profile to understand the photosynthetic responses of young açaí palm to drought. 2018. Journal Photosynthesis Research. Accepted. PDF

 

Almeida, S.F., Silva, L.R.C., Chagas-Junior, G.C.A., Oliveira, G., Silva, S.H.M., Vasconcelos, S., Lopes, A.S. Diversity of yeasts during fermentation of cocoa from two sites in the Brazilian Amazon. 2018. Acta Amazonica. Acta Amazonica. 49(1):64-70. PDF

 

PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly.2018. BMC Bioinformatics. 19(297): 1-10. PDF

 

Herrera, H., Valadares, R., Oliveira, G., Fuentes, A., Almonacid, L., Bashan, Y., Arriagada, C. Adaptation and tolerance mechanisms developed by mycorrhizal Bipinnula fimbriata plantlets (Orchidaceae) in a heavy metal-polluted ecosystem. 2018. Mycorrhiza. Mycorrhiza. 28(7):651-663. PDF

 

Maldonado, L., Stegmayer, G., Milone, D., Oliveira, G., Rosenzvit, M., Kamenetzky, L. Whole genome analysis of codon usage in Echinococcus. 2018. Mol. Biochem. Parasitol. 225:54-66. PDF

 

Bosse, M., Heuwieser, A., Heinzel, A., Lukas, A., Oliveira, G., Mayer, B.. Biomarker panels for characterizing microbial community biofilm formation as composite molecular process. PLoS One. 13(8): e0202032. PDF

 

Souza, K.P., Setúbal, J.C., Carvalho, A.C.P.L.F., Oliveira, G., Chateau, A., Alves, R.C.O. Machine Learning Meets Genome Assembly. 2018. Briefings in Bioinformatics. Accepted. PDF

 

Nunes, G.L., Oliveira, R.R.M., Guimarães, J.T.F., Giulietti, A.M., Caldeira, C., Vasconcelos, S., Pires, E., Dias, M., Watanabe, M., Pereira, J., Jaffé, R., Bandeira, C.H.M.M., Carvalho-Filho, N., Silva, E.F., Rodrigues, T.M., Santos, F.M.G., Fernandes, T., Castilho, A., Souza-Filho, P.W.M., Imperatriz-Fonseca, V., Siqueira, J.O., Alves, R., Oliveira, G. Quillworts from the Amazon: a multidisciplinary populational study on Isoetes serracarajensis and Isoetes cangae. PLoS One. 13(8): e0201417. PDF

 

Ramalho, A.J, Zappi, D.C., Nunes, G.L., Watanabe, M.T.C., Vasconcelos, S.,  Dias, M.C., Jaffé, R., Prous, X., Giannini, T.C., Oliveira, G., Giulietti, A.M. Blind testing: DNA barcoding sheds light upon the identity of plant fragments as a subsidy for cave conservation. 2018. Frontiers in Plant Science. 9:1052. PDF

 

Lanes, E., Pope, N.S., Alvez, R., Carvalho-Filho, N.M., Giannini, T.C., Giulietti, A.M., Imperatriz-Fonseca, V.L., Monteiro, W., Oliveira, G., Silva, A.R., Siqueira, J.O., Souza-Filho, P.M.W., Vasconcelos, S., Jaffé, R. Landscape genomic conservation assessment of a narrow-endemic and a widespread morning glory from Amazonian savannas. 2018. Frontiers Plant Science. 9:532. PDF

 

Nascimento, S.V., Magalhães, M.M., Cunha, R.L., Costa, P.H.O., Alves, R.C.O., Oliveira, G., Valadares, R. Differential accumulation of proteins in oil palms affected by Fatal Yellowing disease. 2018. PLoS One. 13(4): e0195538. PDF

 

Santos, V.C.A., Correa, L., Meiguins, B., Oliveira, G., Alves, R. Metagenomics-based signature pattern cluster and interactive visualization analysis. 2018. IEEE IJCNN Conference Proceedings. Accepted.

 

Castro, A.C.H., Kochi, L., Moço, A.C.R., Coimbra, R.S., Oliveira, G., Cuadros-Orellana, S., Madurro, J.M., Brito-Maduro, A.G. A new genosensor for meningococcal meningitis diagnosis using biological samples. 2018. Journal of Solid State Electrochemistry. Online 1-8. PDF

 

Jaffé, R., Prous, X., Calux, A., Gastauer, M., Nicacio, G., Souza-Filho, P.W.M., Imperatriz-Fonseca, V.L., Oliveira, G., Brandi, I.V., Siqueira, J.O. Conserving relics from ancient underground worlds: Assessing the influence of cave and landscape features on obligate subterranean dwellers from the Eastern Amazon. 2018. PeerJ. 6:e4531. PDF

 

Radio, S., Fontenela, S., Solana, Salim, A.C.M., Araújo, F.M.G., Ortiz, P., Hoban, C. Miranda, E., Gayo, V., Pais, F.S.M., Solana, H., Oliveira, G. Smircich, P., Tort, P. Pleiotropic alterations in gene expression in Latin American Fasciola hepatica isolates with different susceptibility to drugs. 2018. Parasites & Vectors. 11(56):1-11.PDF

 

Oliveira, R.R.M., Pires, E.S., Vasconcelos, S., Pietrobon, T., Prous, X., Oliveira, G. Complete mitochondrial genome of Glomeridesmus spelaeus (Diplopoda), a troglobitic species from Carajas iron-ore caves (Para, Brazil). bioRxiv. 2018. PDF

 

 

2017

 

Giulietti, A.M., Oliveira, G., Jaffé, R. O fim desta viagem / The end of this In: Paisagens e Plantas de Carajás / Landscapes and Plants of Carajás. ed. Instituto Tecnológico Vale, 2017, v.1, p. 221-231. PDF

 

Cuesta-Astroz, Y., Santos, A., Oliveira, G., Jensen, L.J. An integrative method to unravel the host-parasite interactome: an orthology-based approach. 2017. bioRxiv. PDF

 

Nancucheo, I., Bittencourt, J., Sahoo, P.K., Alves, J.O., Siqueira, J.O., Oliveira, G. Recent developments for remediating acidic mine waters using sulfidogenic bacteria. 2017. BioMed Research International. 2017:1-17. PDF

 

Pádua, F.; Castro, A.; Silva, J.; Oliveira, G.; Cuadros, S.; Madurro, J.; Brito-Madurro, A. A novel polymer-based genosensor for the detection and quantification of Streptococcus pneumoniae in genomic DNA sample. 2017. Polymer Engineering & Science. Accepted.

 

Nancucheo, I., Johnson, D.B., Lopes, M., Oliveira, G. Reductive Dissolution of a Lateritic Ore Containing Rare Earth Elements (REE) Using Acidithiobacillus Species. 2017. Solid State Phenomena. 262: 299-302. PDF

 

Figueiró, H.V., Li, G., Trindade, F.J., Assis, J., Pais, F., Fernandes, G., Santos, S.H.D., Hughes, G.M., Komissarov, A., Antunes, A., Trinca, C.S., Rodrigues, M.R., Linderoth, T., Bi, K., Silveira, L., Azevedo, F.C.C., Kantek, D., Ramalho, E., Barrasaloti, R.A., Villela, P.M.S., Nunes, A.L.V., Teixeira, R.H.F., Morato, R.G., Loska, D., Saragueta, P., Gabaldón, T., Teeling, E.C., O’Brien, S.J., Nielsen, R., Coutinho, L.L., Oliveira, G., Murphy, W.J., Eizirik, E. Genome-wide signatures of complex introgression and adaptive evolution in the big cats. 2017. Science Advances. 3(7): e1700299. PDF

 

Medeiros, J.D., Leite, L.R., Pylro, V.S., Silva, F., Mendes, V., Fernandes, G.R., Salim, A.C., Araújo, F., Volpini, A.C., Oliveira, G., Cuadros-Orellana, S. Single-cell sequencing reveals metal-adapted strains and the effect of phage predation on the microevolution of Chitinophagaceae in acid mine drainage. 2017. Molecular Ecology. 5541-5551. PDF

 

Babiychuk, E., Kushnir, S., Vasconcelos, S., Dias, M.C., Carvalho-Filho, N., Nunes, G.L., Santos, J.F., Tyski, L., Silva, D.F., Castilho, A., Fonseca, V.L.I., Oliveira, G. Natural history of the narrow endemics Ipomoea cavalcantei and I. marabaensis from Amazon Canga savannahs. 2017. Scientific Reports. 7:7493. PDF

 

Jeremias, W.J., Araújo, F.M.G., Queiroz, F.R., Pais, F.S.M., Mattos, A.C.A., Coelho, P.M.Z.C., Oliveira, G., Kusel, J.R., Guerra-Sá, J.R., Coimbra, R.S., Babá, E.H. Comparative sequence analysis reveals regulation of genes in developing schistosomula of Schistosoma mansoni exposed to host portal serum. 2017. PLoS One. E 12(6): e0178829. PDF

 

Adema, C.M; Hillier, L.W; Jones, C.S.; Loker, E.S.; Knight, M.; Minx, P.; Oliveira, G.; Raghavan, N.; Shedlock, A.; do Amaral, L.R.; Arican-Goktas, H.D.; Assis, J.G.; Baba, E.H.; Baron, O.L.; Bayne, C.J.; Bickham-Wright, U.; Biggar, K.K.; Blouin, M.l; Bonning, B.C.; Botka, C.; Bridger, J.M.; Buckley, K.M.; Buddenborg, S.K.; Lima Caldeira, R.; Carleton, J.; Carvalho, O.S.; Castillo, M.G.; Chalmers, I.W.; Christensens, M.; Clifton, S.; Cosseau, C.; Coustau, C.; Cripps, R.M.; Cuesta-Astroz, Y.; Cummins, S.F.; di Stephano, L.; Dinguirard, N.; Duval, D.; Emrich, S.; Feschotte, C.; Feyereisen, R.; FitzGerald, P.; Fronick, C.; Fulton, L.; Galinier, R.; Gava, S.G.; Geusz, M.; Geyer, K.K.; Giraldo-Calderón, G; de Souza Gomes, M.; Gordy, M.A.; Gourbal, B.; Grunau, C.; Hanington, P.C.; Hoffmann, K.F.; Hughes, D.; Humphries, J.; Jackson, D.J.; Jannotti-Passos, L.K.; de Jesus Jeremias, W.; Jobling, S.; Kamel, B.; Kapusta, A.; Kaur, Satwant; Koene, JM.; Kohn, AB.; Lawson, D.; Lawton, SP; Liang, D.; Limpanont, Y.; Liu, S.; Lockyer, A.E.; Lovato, T.L.; Ludolf, F.; Magrini, V.; McManus, D.P.; Medina, M.; Misra, M.; Mitta, G.; Mkoji, G.M.; Montague, M.J.; Montelongo, C.; Moroz, L.L.; Munoz-Torres, M.C.; Niazi, U.; Noble, L.R.; Oliveira, F.S.; Pais, F.S.; Papenfuss, A.T.; Peace, R.; Pena, J.J.; Pila, E.A.; Quelais, T.; Raney, B.J.; Rast, J.P.; Rollinson, D.; Rosse, I.C.; Rotgans, B.; Routledge, E.J.; Ryan, K.M.; Scholte, L.L. S.; Storey, K.B.; Swain, M.; Tennessen, J.A.; Tomlinson, C.; Trujillo, Da.L.; Volpi, E.V.; Walker, A.J.; Wang, T.; Wannaporn, I.; Warren, W.C.; Wu, X.; Yoshino, T.P.; Yusuf, M.; Zhang, S.; Zhao, M.; Wilson, R.K. 2017. Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nature Communications. 8:15451. PDF

 

Siniscalchi, L.A.b., Leite, L.R., Oliveira, G., Chernicharo, C.A.L., Araújo, J.C. Illumina sequencing-based analysis of a microbial community enriched under anaerobic methane oxidation condition coupled to denitrification revealed coexistence of aerobic and anaerobic methanotrophs. 2017. Environmental Science and Pollution Research. 24(20):16751-16764. PDF

 

Scholte, L., Mourão, M.M., Pais, F., Melesina, J., Robaa, D., Volpini, A.C., Sippl, W., Pierce, R.J., Oliveira, G., Nahum, L. Evolutionary relationships among protein lysine deacetylases of parasites causing neglected diseases. 2017. Infection, Genetics and Evolution. 53:175-188.

 

Gava, S.G., Paula, N.C.C.S.T., Salim, A.C.M., Araújo, F.M.G., Oliveira, G., Mourão, M. Schistosoma mansoni: off-target analyses using nonspecific double-stranded RNAs as control for RNAi experiments in schistosomula. 2017. Experimental Parasitology. 177:98-103. PDF

 

Badotti, F., Garcia, C.F., Vaz, A.B.M., Fonseca, P.L.C., Nahum, L.A., Oliveira, G., Góes-Neto, A. Effectiveness of ITS and sub-regions as DNA barcode markers for the identification of Basidiomycota (Fungi). 2017. BMC Microbiology. Accepted.

 

Maldonado, L.L.; Assis, J.; Araújo, F.M.G.; Salim, A.C.M.; Macchiaroli, N.; Cucher, M.; Camicia, F.; Fox, A.; Rosenzvit, M.; Oliveira, G.; Kamenetzky, L. The Echinococcus canadensis (G7) genome: a key knowledge of parasitic plathyhelmith human diseases. 2017. BMC Genomics.  18:204. PDF

 

Cuesta-Astroz , Y., Oliveira, F.S., Nahum, L.A., Oliveira, G. Helminth secretomes reflect different lifestyles and parasitized hosts. Int. J. Parasitology. 2017. 47:529-544. PDF

 

Vaz, A.B.M., Fonseca, P.L.C., Leite, L.R., Badotti, F., Salim, A.C.M., Araújo, F.M.G., Cuaros-Orellana, S., Duarte, A.A., Rosa, C.A., Oliveira, G., Góes-Neto, A. Using Next-Generation Sequencing (NGS) to uncover diversity of wood-decaying fungi in neotropical atlantic forests. 2017. Phytotaxa. 295(1):1-21. PDF

 

Rozas, E., Mendes, M.A., Nascimento, C.A.O., Espinosa, D.C., Oliveira, R., Oliveira, G., Custodio, M.R. Bioleaching of electronic waste using bacteria isolated from the marine sponge Hymeniacidon heliophila (Porifera). 2017. Journal of Hazardous Materials. 329:120-130. PDF 

 

Rosse, I.C., Assis, J.G., Oliveira, F.S., Leite, L.R., Araújo, F., Zerlotini, A., Volpini, A., Dominitini, A.J., Lopes, B.C., Arbex, W.A., Machado, M.A., Peixoto, M.G.C.D., Verneque, R.S., Martins, M.F., Coimbra, R.S., Silva, M.V.G.B, Oliveira, G., Carvalho, M.R.S. Whole-genome sequencing of Guzerá cattle: SNPs and INDELs in genes associated with production traits, disease resistance and heat tolerance. 2017. Mammalian Genome. 28(1-2):66-80. PDF

2016

Jaffé, R., Prous, X., Giannini, T.C., Imperatriz-Fonseca, V.L., Maurity, C., Oliveira, G., Zampaulo, R.,  Siqueira, J.O. (2016) Reconciling mining with the conservation of cave biodiversity: A quantitative baseline to help establish conservation priorities. PLoS One. 11(12): e0168348. PDF

 

Book Chapter: Tavares, N.C., Aguiar, P.H.N., Gava, S.G., Oliveira, G., Mourão, M.M. (2016). Schistosomiasis: Setting Routes for Drug Discovery, Special Topics in Drug Discovery, Dr. Taosheng Chen (Ed.), InTech, DOI: 10.5772/65386. Available here.

 

Martins, A.S., Ferreira, B.O., Ribeiro, N.C., Martins, R., Leite, L.R., Oliveria, G., Colturato, L.F., Chernicharo, C.A., Araújo, J.C. Metagenomic analysis and performance of a mesophilic aerobic reactor treating food waste at various load rates. 2016. Environmental Technology. In Press. PDF

 

Santana, R.S.M., Fernandes, G.W., Ávila, M.P., Reis, M.P., Araújo, F.M.G., Salim, A.C., Oliveira, G., Chartone-Souza, E., Nascimento, A.M.A. Endophytic Microbiota Associated with the Root Tips and Leaves of Baccharis dracunculifolia. Braz. Arch. Biol. Technol. 59: e16160287. PDF

 

Reis, E.P,. Paixão, D.M., Brustoini, O.J.B., Silva, F.F., Silva, W., Araújo, F.M.G., Salim, A.C.M., Oliveira, G., Guimarães, S.E.F. Expression of myogenes in longissimus dorsi muscle during prenatal development in commercial and local Piau pigs. 2016. Genetics and Molecular Biology. 39(4):589-599. PDF

 

Magalhães, D., Scholte, L.L.S., Silva, N.V., Oliveria, G.C., Zipfel, C., Takita, M.A., Souza, A.A. LRR-RLK Family from two Citrus species: Genome-wide identification and evolutionary aspects. 2016. BMC Genomics. 17:623. PDF

 

Semenchenko, A., Oliveira, G., Atman, A.P.F. Hybrid agent-based model for quantitative in-silico cell-free protein synthesis. 2016. BioSystems. 150:22–34. PDF

 

Pylro, V., Morais, D.K., Oliveira, F.S., Santos, F.G., Lemos, L.N., Oliveira, G., Roesch, L.F.W. Brazilian Microbiome Project OS: The most flexible and user-friendly tool sets for microbiome studies. 2016. Microbial Ecology. 72:443-447.  PDF

 

Leite, L., Medeiros, J., Fernandes, G., Araújo, F.M.G., Pylro, V., Salim, A., Volpini, A., Oliveira, G., Cuadros-Orellana, S. Draft Genome Sequence of Hydrotalea flava strain CCUG 51397 (T). 2016. Genome Announcement. 4(3): e00527-16. PDF

 

Holanda, R., Hedrich, S., Ñancucheo, I., Oliveira, G., Grail, B.M., Johnson, D.B. Isolation and characterisation of mineral-oxidizing “Acidibacillus” spp. from mine sites and geothermal environments in different global locations. 2016. Research in Microbiology. 167:613-623. PDF

 

Assis, R.R., Ludolf, F., Nakajima, R., Jasinskas, A., Oliveira, G.C., Felgner, P.L., Gaze, S.T., Loukas, A., LoVerde, P.T., Bethony, J.M., Correa-Oliveira, R., Calzavara-Silva, C.E. Next-generation proteome array for Schistosoma mansoni: determining the immunome of schistosomiasis. 2016. International Journal for Parasitology. 26:411-415. PDF

 

Reis, M.P, Dias, M.F., Costa, P.S., Ávila, M.P., Leite, L.R., Araújo, F.M.G., Salim, A.C., Bucciarelli-Rodriguez, M., Oliveria, G., Chartone-Souza, E., Nascimento, A.M.A. Metagenomic signatures of a tropical mining-impacted stream reveal complex microbial and metabolic networks. 2016. Chemosphere. 161:266-273. 

 

Ñancucheo, I., Oliveira, R., Dall'Agnol, H., Johnson, B., Grail, B., Holanda, R., Nunes, G.L., Orellana, S.C., Oliveira, G. Draft Genome Sequence of a Novel Species of Acidophilic Iron-oxidizing Firmicutes, “Acidibacillus ferrooxidans” (SLC66T). Genome Announcements. 2016.  4(3): e00383-16. PDF

 

Chevalier, F.D., Clec'h, W.L., Enga, N., Rugel, A.R., Assis, R.R., Oliveira, G., Holloway, S.P., Cao, S., Hart, P.J., LoVerde, R.T., Anderson, T.J.C. Independent 1 origins of loss-of-function mutations conferring oxamniquine resistance in a Brazilian schistosome population. International Journal for Parasitology. 2016. 46:417-424. PDF

 

Zukurov, J.P., Nascimento-Brito, S., Volpini, A., Oliveira, G., Janini, L.M.R., Antoneli, F. Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage. Algorithms for Molecular Biology. 2016. 2016. 11(2):1-15. PDF

 

Dall'Agnol, H., Ñancucheo, I., Johnson, B., Oliveira, R., Leite, L., Pylro, V., Holanda, R., Grail, B., Carvalho, N., Nunes, G.L., Tzotzos, G., Fernandes, G.R., Dutra, J., Orellana, S.C., Oliveira, G. Draft genome sequence of “Acidibacillus ferrooxidans” ITV01, a novel acidophilic Firmicute isolated from a chalcopyrite mine drainage site in Brazil. 2016. Genome Announcement. 4(2): e01748-15. PDF

 

Dias, M.F., Colturato, L.F., Oliveira, J.P., Leite, L.R., Oliveira, G., Chernicharo, C.A., Araújo, J.C. Metagenomic analysis of a desulphurisation system used to treat biogas from 1 vinasse methanisation. 2016. Bioresource Technology. 205:58-66. PDF

 

Silva, D.M., Silva, M.P., Vidigal, P.M., Oliveira, G.C., Ribon, A.O.B. Draft genome sequences of Staphylococcus aureus strains isolated from subclinical bovine mastitis in Brazil. 2016. Genome Announcements. 4(1):e01594-15. PDF

2015

Laguardia-Nascimento, M., Branco, K.M.G.R., Gasparini, M.R., Giannattasio-Ferraz, S., Araujo, F.M.G., Nicoli, J.R., Oliveira, G., Barbosa-Stancioli, E.F. Vaginal microbiome characterization of nellore cattle using metagenomic analysis. 2015. PLoS One. 10(11): e0143294. PDF

 

Rodrigues, L.P., Ferreira, D.C., Ferreira, Cuadros-Orellana, S., Oliveira, G.C., Brito-Madurro, A.G., Oliveira, R.J., Abrahão Jr., Odonírio, Madurro, J.M. Electropolymerization of hydroxyphenylacetic acid isomers and the development of a bioelectrode for the diagnosis of bacterial meningitis. 2015. Journal of Applied Eletrochemistry. 45:1277-1287. PDF

 

Valdivia, H.O., Scholte, L.L.S., Oliveira, G., Gabaldon, T., Bartholomeu, D.C. Phylogenomics of six Leishmania species reveals lineage-specific gene family expansions driving parasite adaptation. 2015. BMC Genomics. 16:887. PDF

 

Nascimento-Brito, S., Zukurov, J.P., Maricato, J.T., Volpini, A.C., SalimA.C., AraújoF.M.G., Coimbra, R.S., Oliveira, G., Antoneli, F., Janini. L.M.R. HIV-1 Tropism determines different mutation profiles in proviral DNA. 2015. PLoS One. 10(9):e0139037. PDF

 

Almeida, G.T., Lage,R.C.G., Anderson. L., Venancio, T.M., Nakaya, H.I., Miyasato, P.A., Rofatto, H.K., Zerlotini, A., Nakano, E., Oliveira, G., Verjovski-Almeida, S. Synergy of omeprazole and praziquantel in vitro treatment against Schistosoma mansoni adult worms. 2015, PLoS NTD. 9(9): e0004086. PDF

 

Kehdy, F.S.G , Gouveia, M.H., Magalhães, W.C.S., Hormoto, A.R., Horta, B.L., Moreira, R.G., Leal, T.P., Scliar, M.O., Soares-Souza, G.B., Rodrigues-Soares, F., Araújo, G.S., Zamudio, R., Anna, H.P.S., Santos, H.C., Duarte, N.E., Fiaconne, R.L., Figueiredo, C.A., Silva, T.M., Costa, G.N.O., Beleza, S., Berg, D.E., Cabrera, L., Debortoli, G, Duarte, D., Ghirotto, S., Gilman, R.H., Gonçalves, V.F., Marrero, A.R., Muniz, Y.C., Weissensteiner, H., Yeager, M., Rodrigues, L.C., Barreto, M.L., Lima-Costa, F., Pereira, A.Cc, Rodrigues, M.R., Tarazona-Santos, E., EPIGEN Project Consortium. Origin and dynamics of admixture in Brazilians and its effect on the pattern of deleterious mutations. Proceedings of the National Academy of Sciences of the United States of America. 2015. (author as member of the EPIGEN Project Consortium). 112(28):8696-8701. PDF

 

Medeiros, J.D., Leite, L.R., Cuadros-Orellana, S., Oliveira, G. Taxonomic and functional diversity of microbial community from a mining environment. BMC Bioinformatics. 2015 16(Suppl 8):A3. PDF

 

Cordeiro, A.P., Pereira, R.A.S., Chapeaurouge, A., Coimbra, C.S., Perales, J., Oliveira, G., Candiani, T.M.S., Coimbra, R.S. Comparative proteomics of cerebrospinal fluid reveals a predictive model for differential diagnosis of pneumococcal, meningococcal, and enteroviral meningitis, and novel putative therapeutic targets. BMC Genomics 2015, 16(Suppl 5):S11. PDF

 

Chakrabarti, A., Oehme, I., Witt, O., Oliveira, G., Sippl, W., Romier, C., Pierce, R.J., Jung, M. HDAC8, a multifaceted target for therapeutic interventions. Trends in Pharmacological Sciences. 2015. 36(7):481-492. PDF

 

Marek, M., Oliveira, G., Pierce, R.J., Jung, M., Sippl, W., Romier, C. Drugging the schistosome zinc-dependent HDACs: current progress and future perspectives. Future Medicinal Chemistry. Special Focus Issue: Schistosomiasis, 2015. 7(6), 783-800. PDF

 

Palhares, R., Drummond, M., Brasil, B., Cosenza, G., Brandão, M.G., Oliveira, G. Medicinal plants recommended by the World Health Organization: DNA barcode identification associated with chemical analyses guarantees their quality. PLoS One, 2015. 10(5):e0127866. PDF

 

Oliveira, G., Pierce, R.J. How has the genomics era impacted schistosomiasis drug discovery? Future Medicinal Chemistry, 2015. 7(6):685-687. PDF

 

Costa, P.S., Reis, M.P., Leite, L.R., Araújo, F.M.G., Salim, A.C.M., Oliveira, G., Barbosa, F., Chartone-Souza, E., Nascimento, A.M.A. Metagenome of microbial a community inhabiting the metal-rich tropical stream sediment. PLoS One, 2015. 10(3): e0119465. PDF

 

Pereira, U.P., Bonetti, A.M., Goulart, L.R., Santos, A.R., Oliveira, G.C., Cuadros-Orellana, S., Ueira-Vieira, C. Complete mitochondrial genome sequence of Melipona scutellaris, a Brazilian stingless bee. Mitochondrial DNA. 2015. Early Online 1-2. PDF

 

2014

 

Grossmann, S.M.C., De Oliveira, G.C., Teixeira, R., Vieira do Carmo, M.A. Stimulated And Non-Stimulated Salivary Flows Should Be Tested For The Presence Of HCV RNA In Saliva Samples From Patients With Chronic Hepatitis C. Dentistry. 4(5):232. PDF

 

Cabezas-Cruz, A., Lancelot, J., Caby, S., Oliveira, G., Pierce, R.J. Epigenetic control of gene function in schistosomes: a source of therapeutic targets? Front. Genet. Evolutionary and Genomic Microbiology, 2014. 5:317.  PDF

 

Carvalho, W.A., Domingues, R., Prata, M.C.A., Silva, M.G.V.B., Oliveira, G.C., Guimarães, S.E.F, Machado, M.A.  Microarray analysis of tick-infested skin in resistant and susceptible cattle confirms the role of inflammatory pathways in immune activation and larval rejection.  Veterinary Parasitology.  2014. 205:307–317. PDF

 

Wan, D., Ludolf, F., Alanine, D.G.W., Stretton, O., Ali, E.A., Al-Barwary, N., Wang, X., Doenhoff, M.J., Mari, A., Fitzsimmons, C.M., Dunne, D.W., Nakamura, R., Oliveira, G.C., Alcocer, M.J.C., Falcone, F.H. Use of humanised rat basophilic leukaemia cell line RS-ATL8 for the assessment of allergenicity of Schistosoma mansoni proteins. PloS NTD. 2014. 8(9): e3124. PDF

 

Palhares R.M., Drummond, M.G., Brasil, B.S., Krettli, A.U., Oliveira, G.C., Brandão, M.G. The use of an integrated molecular-, chemical- and biological-based approach for promoting the better use and conservation of medicinal species: A case study of Brazilian quinas. J Ethnopharmacol. 2014. (155) 815-822. PDF

 

Cuesta-Astroz, Y., Scholte, L.L.S., Pais, F.S., Oliveira, G., Nahum, L.A. Evolutionary analysis of the cystatin family in three Schistosoma Species. Frontiers in Genetics, section Evolutionary and Genomic Microbiology. 2014. Front Genet. 2014 Jul 9(5):206. PDF

 

Andrade, L.F., Mourão, M.M., Geraldo, J.A., Silva, L.L., Neves, R.H., Vo;ini, A., Machado-Silva, J.R., Araújo, N., Nacif-Pimenta, R., Caffrey, C.R., Oliveira, G. Regulation of Schistosoma mansoni development and reproduction by the Mitogen-Activated Protein Kinase Signaling Pathway. PLoS Neglected Tropical Diseases. 2014, 8(6): e2949. PDF

 

Silverio, M.S., Rodovalho, V.R., Bonetti, A.M., Oliveira, G., Cuadros-Orellana, S., Ueira-Vieira, C., Santos, A.R. Preliminary characterization of the mitochondrial genome of Melipona scutellaris, a Brazilian stingless bee.  BioMed Resaerch International.  2014. Article ID 927546.  PDF

 

Gava, S.G., Scholte, L.L.S., Oliveira, R.P., Oliveira, G. Heterologous Expression in Caenorhabditis elegans as an Alternative Approach to Functional Studies in Schistosoma mansoni.  Front. Genet. 2014. 5:1-5.  PDF

 

Pais, F.S., Ruy, P.C., Oliveira, G., Coimbra, R.S. Assessing the efficiency of multiple sequence alignment programs. Algorithms for Molecular Biology. 2014, 9:4. PDF

 

Oliveira, G. Cancer and parasitic infections: similarities and opportunities for the development of new control tools. Revista da Sociedade Brasileira de Medicina Tropical. 2014. 47(1):1-2. PDF

 

Gaze, S., Driguez, P., Pearson, M.S., Mendes, T., Doolan, D.L., Trieu, A., McManus, D.P., Gobert, G., Correa Oliveira, R., Cardoso, F.C., Oliveira, G., Nakajima, R., Jasinskas, A., Hung, C., Liang, L., Pablo, J., Bethony, J.M., Felgner, P.L., Loukas, A. The Schistosoma mansoni antibody immunomes for naturally resistant and chronically infected people. PLoS Pathogens. 2014. 10:e1004033. PDF

 

Ludolf, F., Patrocínio, P., Correa-Oliveira, R., Gazzinelli, A., Falcone, F.H., Teixeira, A., Perales, J., Oliveira, G., Silva-Pereira, R. A. Serological screening of the Schistosoma mansoni adult worm proteome. PLoS NTD. 2014. s 8(3): e2745. PDF

 

Batista, D.F.A., Freitas Neto, O.C., Leite, L.R., Varani, A.M., Araujo, F.M.G., Almeida, A.M., Ribeiro, S.A.M., Oliveira, G., Barrow, P.A., Berchieri Junior, A. Draft Genome Sequence of Salmonella enterica subspecies enterica serovar Gallinarum biovar Pullorum Strain FCAV198, a Brazilian chicken pathogen. Genome Announcements. 2014. 2(1):e00028-14. PDF

 

2013

 

Coeli, R., Baba, E.H., Araujo, N.,. Coelho, PMCZ., Oliveira, G. Praziquantel Treatment Decreases Schistosoma mansoni. PLoS Neglected Tropical Diseases. 2013. 7(12): e2596. PDF

 

Gurgel-Giannetti, J., Oliveira, G., Brasileiro Filho, G., Martins, P., Vainzof, M., Hirano, M. Mitochondrial cardioencephalomyopathy due to a novel SCO2 mutation in a Brazilian patient. JAMA Neurology. 2013, 70(2):258-261. PDF

 

Cuadros-Orellana, S., Leite, L.R., Smith, A., Medeiros, J.D., Badotti, F., Fonseca, P.L.C., Vaz, A.B.M., Oliveira, G., Góes-Neto, A. Assessment of fungal diversity in the environment using metagenomics: a decade in review. Fungal Genomics and Biology. 2013. 3(2):110. PDF

 

Marek, M., Kannan, S., Hauser, A, Mourão, M.M., Caby, S., Cura, V., Stolfa, D.A., Schmidtkunz, K., Lancelot, J., Renaud, J., Oliveira, G., Sippl, W., Jung, M., Cavarelli, J., Pierce, R.J., Romier, C. Structural Basis for the Inhibition of Histone Deacetylase 8 (HDAC8), a Key Epigenetic Player in the Blood Fluke Schistosoma mansoni. PLoS Pathogens. 2013. 9 (9):|e1003645. PDF

 

Lancelot, J., Caby, S., Dubois-Abdesselem, F., Vanderstraete, M., Trolet, J., Oliveira, G., Bracher, F., Jung, M., Pierce, R.J. Schistosoma mansoni sirtuins: characterization and potential as chemotherapeutic targets. PLoS Neglected Tropical Diseases. 7(9):e2428. PDF

 

Glenn, T.C., Lance, S.L., McKee, A.M. Webster, B.L., Emery, A.M., Zerlotini, A., Oliveira, G., Rollinson, D., Faircloth, B.C. Significant variance in genetic diversity among populations of Schistosoma haematobium detected using microsatellite DNA loci from a genome-wide database. Parasite & Vectors. 2013. 6:300. PDF

 

Thiele, E.A, Oliveira, G., Gazzinelli, A., Minchella, D.J. Elucidating the temporal and spatial dynamics of Biomphalaria glabrata genetic diversity in three Brazilian villages. Tropical Medicine & International Health. 2013. 18(10):1164-73.

 

Pereira, U.P., Santos, A.R., Hassan, S.S., Abjurjaile, F.F., Soares, S., Ramos, R.T.J., Carneiro, A.R., Guimarães, L.C., Almeida, S.S., Diniz, C.A.A., Barbosa, M.S., Sá, P.G., Ali, A., Bakhtiar, S.M., Dorella, F.A., Zerlotini, A., Araújo, F.M.G., Leite, L.R., Oliveira, G., Miyoshi, A., Silva, A., Azevedo, V., Figueiredo, H.C.P. Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks. Standards in Genomic Sciences. 2013, 8(2):, 188-197. PDF

 

Ricardo J.P.S. Guimarães, Corina C. Freitas, Luciano V. Dutra, Guilherme Oliveira and Omar S. Carvalho (2013). Multiple Regression for the Schistosomiasis Positivity Index Estimates in the Minas Gerais State - Brazil at Small Communities and Cities Levels, Parasitic Diseases - Schistosomiasis, Rashika El Ridi (Ed.), ISBN: 978-953-51-0942-6, InTech. PDF

 

Badotti, F., Vaz, A., Fonseca, P., Leite, L., Araújo, F., Salim, A., Cuadros, S., Oliveira, G., Góes-Neto, A. Fungal diversity in lignocellulosic woody plant residues from a neotropical rainforest fragment: a metagenomics approach. Páginas 106-111. Anais [do] 64º Congresso Nacional de Botânica: botânica sempre viva e XXXIII ERBOT Encontro Regional de Botânicos MG, BA e ES. Organizadores João Renato Stelmann ... [et al.]. – Belo Horizonte : Sociedade Botânica do Brasil, 2013. PDF

 

1987 to 2012