peer reviwed publications
2025
Giannini, T.C., Andrino, C.O., Barbosa-Silva, R.G., Bittencourt, J.A., Borges, R.C., Brito, R.R., Cavalcante, R., Costa, C.P.W., Dantas, S., Gatauer, M., Gomes, V.F., Maia, U.M., Miranda, L., Nunes, S., Oliveira, G., Paracampo, A., Pontes, P.R., Ramos, S., Santos, J.E., Silveira, O.T., Tedeschi, R., Valadares, R.B., Viana, P., Biesmeijer, J., Measuring the natural capital of Amazonian forests: A case study of the National Forest of Carajás, Brazil. Ecosystem Services. 2025. 101734. PDF
Leal, B.S.S., Tavares, V.C., Watanabe, M.T.C., Cardoso, A.L.R., Tyski, L., Alves-Pereira, A., Dalapicolla, J., Oliveira, G., Carvalho, C.S. Genetic-based conservation status indicators applied to endemics with restricted distributions: a case for eastern Amazonian cangas plants. Annals of Botany. 2025, mcaf030. PDF
Silva, J.B., Benathar, T.C.M., Azevedo, R.L.F., Trevelin, L.C., C.Y. Nagamachi, Oliveira, G., Pieczarka, J.C. Cave-dwelling bats of Carajás National Forest: new cytogenetic data of threatened species. 2024. Ecology and Evolution. Vol 15:4: e11296. PDF
Cavalcante, L.D. R., Santos Silva, C., Ferreira Vidal, A., Pires, E.S., Nunes, G.L., Montag, L.F.A., Oliveira, G., Ribeiro-dos-Santos, A., Santos, S., Souza, S.J., Souza, J.E.S., Sakamoto, T. The complete mitogenome of Amazonian Brachyplatystoma filamentosum and the evolutionary history of body size in the order Siluriformes. Scientific Reports. 2025. 15, 9873. PDF
Muñoz-García, M., Bansal, K.C., Bao, Y., Brinkley, S.C., Buzan, E., Castle. D., Cepeda-Hernández, M.L., Correard, S., Crawford, A.J., Silva, J.M., Silva. M., Ekpe, S., Fahime. E.E., Engelhardt, A., Faggionato, D., Haas, A.S., Hautea, D.M., Hossaert-McKey, M., Mazzoni, D.J., Jaspars, M., Katee, S., Kress, J., Kwarteng, A., Lijtmaer, D.A., Lee, S., Noriega, I.L., Lyal, C., Maharaj, G., McCartney, A.M., Miano, D., Mulema, J., Oliveira, G., Omesa, F.O., Orozco, P., Overmann, J., Poetsch, A., Prat, C., Raposo, D.S., Restrepo, S., Rhoden, F., Rouard, M., Serepa-Dlamini, M.H., Aguilera, M.A.S., Suzuki, M., Tiambo, C.K., Wiemers, M., Wong, L., Yu, E., Zambrano, M.M., Zhou. J., Scholz, A.H. Navigating COP16’s digital sequence information outcomes: What researchers need to do in practice. 2025. 6 (3). 101208. PDF
Vignale, F.A., Garcia, A.H., Modenutti, C.P., Sosa, E.J., Defelipe, L.A., Oliveira, R., Nunes, G.L., Acevedo, R.M., Burguener, G.F., Rossi, S.M., Zapata, P.D., Marti, D.A., Sansberro, P., Oliveira, G., Catania, E.M., Smith, M.N., Dubs, M.N., Nair, S., Barkman, T.J., Turjanski, A.G. Yerba mate (Ilex paraguariensis) genome provides new insights into convergent evolution of caffeine biosynthesis eLife. 2025. 14:e104759. PDF
2024
Moras, L.M., Nobre, C.C., Vasconcelos, S. et al. Almost two hundred years of monotypy and a poorly known life history: multiple lineages of Furipterus (Chiroptera: Furipteridae) were hidden by rocks. Mamm. Biol. 2024. PDF
Penner. F.V., Lynggaard. C.L., Argolo, L.A., Silva, Y.K.r., Oliveira. G., Bohmann. K., Gastauer, M. Navigating diversity: primer impact on arthropod recovery in molecular environmental monitoring in tropical Amazon. 2024. Front. Ecol. Evol., Sec. Conservation and Restoration Ecology. Volume 12. https://doi.org/10.3389/fevo.2024.1411388. PDF
Fonseca, Y.C., Bahulec, C.E., Herrerad, H., Martins, L.H.S., Lopes, A.S., Cassoli, J.S., Trindade, F.C., Costa, I.R.C., Costa, P.H.O., Oliveira, G., Valadares, R.B.S. Multiomics analysis reveals microbial diversity and activity through spontaneous fermentation of Theobroma cacao. 2024. Heliyon, Volume 10, Issue 23, e40542. PDF
Nogueira, A.F., Pires, E.S., Oliveira, G., Trevelin, L.C., Vasconcelos, S. New mitochondrial genomes of three whip spider species from the Amazon (Arachnida, Amblypygi) with phylogenetic relationships and comparative analysis. 2024. Scientific Reports. 14, 26271.
Vilaça, S.T., Vidal, A.F., Pavan, A.C.d., Silva, B.M., Carvalho, C.S., Povill, C., Luna-Lucena, D., Nunes, G.L., Figueiró, H.V., Mendes, I.S., Bittencourt, J.A.P., Côrtes, L.G., Canesin, L.E.C., Oliveira, R.R.M., Damasceno, R.P., Vasconcelos, S., Barreto, S.B., Tavares, V., Oliveira, G., Martins, A.B., Aleixo, A. Leveraging genomes to support conservation and bioeconomy policies in a megadiverse country. 2024. Cell Genomics. 100678. PDF
Marques, N., Soares, C.D.M., Casali, D.M., Guimarães, E.C., Fava, F.G., Abreu, J.M.S., Moras, L.M., Silva, L.G., Matias, R., Assis, R.L., Fraga, R., Almeida, S.M., Lopes, V.G., Oliveira, V., Missagia, R., Carvalho, E.C., Carneiro, N.J., Alves, R., Souza-Filho, P., Oliveira, G., Miranda, M., Tavares, V.C. Retrieving biodiversity data from multiple sources: making secondary data standardised and accessible. 2024. Biodiversity Data Journal. 12: e133775. PDF
da Silva, Y. K. R., Martins, G. C., Guedes, R. S., Ribeiro, P. G., Gastauer, M., da Silva Junior, E. C., … Ramos, S. J. Native Plant Species as an Alternative to Rehabilitate Iron Ore Waste Piles in Carajás Mineral Province, Brazil. 2024. Communications in Soil Science and Plant Analysis, 55(11), 1579–1592. PDF
Canesin, L.E.C., Vilaça, S.T., Oliveira, R.R.M. et al. A reference genome for the Harpy Eagle reveals steady demographic decline and chromosomal rearrangements in the origin of Accipitriformes. Sci Rep 14, 19925 (2024). https://doi.org/10.1038/s41598-024-70305-w PDF
Molina, M., Oliveira, G., Oliveira, R.R.M., Nunes, J.L., Pires, E.S., Prous, X., Ribeiro, M., Vasconcelos, S. Complete mitochondrial genomes of three vulnerable cave bat species and their phylogenetic relationships within the order Chiroptera. 2023. 19(8): e0308741.
Azzella, M.M., Vecchia, A.D., Abeli, T., Alahuhta, J., Amoroso, V.B., Ballesteros, E., Bertrin, V., Brunton, D., Bobrov, A.A., Caldeira, C., Ceschin, S., Chemeris, E.V., Čtvrtlíková, M., de Winton, M., Gacia, E., Grishutkin, O.g., Hofstra, D., Ivanova, D., Ivanova, M.O., Konotop, N.K., Larson, D.M., Magrini, S., Mjelde, M., Mochalova, O.S., Oliveira, G., Pedersen, O., Pereira, J.B.S., Ribaudo, C., Buján, M.I.R., Troìa, A., Vinogradova, Y.S., Volkova, P.A., Zandonadi, D.N., Zueva, N.V., Bolpagni, R. Global assessment of aquatic Isoëtes species ecology. Freshwater Biology. 2024. 00:1-18. PDF
Asenjo, A., Valois, M., Zampaulo, R.A., Molina, M., Oliveira, R.R.M., Oliveira, G., Vasconcelos, S. New taxonomic insights for Brazilian Syrbatus Reitter (Coleoptera: Satphylinidae: Pselaphinae), including three new species and their mitochondrial genomes. PeerJ. 2024. 12:e17783. PDF
de Medeiros Bento, D., Ferreira, R.L., Vasconcelos, S. et al. Before it’s too late: priority areas for conservation of cryptic and threatened species of troglobitic arthropods in the Brazilian semiarid. Biodivers Conserv (2024). https://doi.org/10.1007/s10531-024-02833-w PDF
Pereira, J.B.S., Vasconcelos, S., Dias, M., Caldeira, C.F., Quandt, D., Oliveira, g., Prado, J. Organellar-genome analyses from the lyophyte genus Isoetesi L. show one of the highest frequencies of RNA editing in land plants. 2024. Frontiers in Plans Science. Vol 15:1. https://doi.org/10.3389/fpls.2024.1298302 PDF
2023
Hamdan, B., Seixas, V.C., Nunes, G.L., Oliveira, G., Bonatto, S.L., Vidal, A., Pires, E.S., Zingali, R.B. The Brazilian Atlantic bushmaster Lachesis (Linnaeus, 1766) mitogenome with insights on snake evolution and divergence (Serpentes: Viperidae: Crotalinae). An Acad Bras Cienc. 2023. 95(3): e20220973. https://doi.org/10.1590/0001-3765202320220973
Martins, R.L., Calderon, E.N., Caldeira, C.F., Santos, F.G., Cavalcante, A.B., Oliveira, G., Esteves, F.A. Desafios e perspectivas na conservação de Isoetes cangae uma macrófica endêmica da Amazônia. 1 ed. 2023. Interciência ISBN 978-85-7193-455-9. PDF
Junior, E.C.S., Ribeiro, P.G., Martins, G.C., Santos, D.C., Gastauer, M., Valadares, R.B.S., Caldeira Júnior, C.F., Souza-Filho, P.W.M., Oliveira, G., Júnior, W.R.N., Ramos, S.J. Mapping soil organic carbon stock through remote sensing tools for monitoring iron minelands under rehabilitation in the Amazon. Environ Dev Sustain. 2023. https://doi.org/10.1007/s10668-023-03777-x PDF
Pontes, P.V.M., Leite, A.M.O., Ferreira, A.L., Souza, M., Araújo, T.S.S., Santos, H.F., Oliveira, G., Bitencourt, J.A., Cavalcanti, A.B., Martins, R.L., Esteves, F.A. Bioprospecting for Isoetes cangae endophytes with potential do promote plant growth. Int. J. Microbiol. 2023. PDF
Lopes, A.V.S., Neto, L.R.G., Cunha, L.P., Cogo, A.J.D., Caldeira, C.F., Oliveira, G., Martins, R.L., Esteves, F.A., Cavaltante, A.B., Duarte, H.M., Zandonardi, D.B., Fonseca, R.N., Santos, M.P. The resilience of the aquatic Isoëtes cangae to terrestrial environment: insights into molecular and ecophysiological adaptations. 2023. http://dx.doi.org/10.2139/ssrn.4372676 PDF
Pinho, C.T., Vidal, A.F., Rocha, T.C.N., Oliveira, R.M., Silva, C.S, Magalhães, L.L., Pinto, P.D.c., Souza, G.B.S., Vieira, J.R.S., Burbano, R.M.R., Sousa, M.S., Souza, J.E.S., Nunes, G., Silva, M.B., Costa, P.F., Sangado, C.G., Sousa, R.C.M., Degrave, W.M.S., Ribeiro-dos-Santos, A., Oliveira, G. Transmission dynamics of SARS-CoV-2 variants in the Brazilian state of Pará. 2023. Frontiers in Public Health. 11. PDF
Asenjo, A., Oliveira, M.P.A., Oliveira, R.R.M., Pires, E.S., Valois, M., Oliveria, G., Vasconcelos, S. The complete mitochondrial genome and description of a new cryptic Brazilian species of Metopiellus Raffray (Coleoptera: Staphylinidae: Pselaphinae). 2023. PeerJ 11:e15697. PDF
Castro, A.F., Assis, I.R., CaldeiraC.F., RamosS.J., Coelho, R.R., Oliveira, G., Medeiros-Sarmento, P.S., Gastauer, M. Minimum thresholds of key ecological attributes facilitate the tracking of mineland restoration. 2023. Resources Policy. 84:103722. PDF
Nascimento, S.V., Costa, P.H.O., Herrera, H., Caldeira, C.F., Gastauer, M., Ramos, S.J., Oliveira, G., Valadares, R.B.S. Proteomic profiling and rhizosphere-associated microbial communities reveal adaptative mechanisms of Dioclea apurensis Kunth in eastern Amazon's rehabilitating minelands. 2023. Plants. 11:712. PDF
Coelho, F.S., Gava, S.G., Andrade, L.F., Geraldo, J.A., Tavares, N.C., Lunkes, F.M.N., Neves, R.H., Machado-Silva, J.R., Pierce, R.J., Oliveira, G.,Mourão, M.M. Schistosoma mansoni coactivator associated arginine methyltransferase (SmCARM1) effect on parasite reproduction. 2023. Frontiers in Microbiology. Front. Microbiol. 14:1079855. PDF
Fraga, R., Tavares, V., Simões, M.H., Prous, X., Girolamo-Neto, C., Brandi, I.V., Oliveira, G., Trevelin, L.C. Caves as wildlife refuges in degraded landscapes in the Brazilian Amazon. 2023. Scientific Reports. 13:6055. PDF
Molina-Mora, J.A., Reales-González, J., Camacho, E., Duarte-Martínez, F., Tsukayama, P., Soto, C., Brenes, H., Cordero-Laurent, E., Nunes, G., Negri, T., Vidal, A., Oliveira, G., Muñoz-Medina, J.E., Mireles-Rivera, G., Kreuze, J., Cristancho, M., Campos-Sánchez, R., Herrera-Estrella, A. Overview of the SARS-CoV-2 genotypes circulating in Latin America during 2021. 2023. Frontiers in Public Health. 2023. Frontiers in Public Health. 11:1095202. PDF
Monteiro, J.S., Almeida, M.S., Medeiros-Sarmento, P.S., Caldeira, C.F., Ramos, S.J., Oliveira, G., Valadares, R.B.S., Gastauer, M. DNA metabarcoding reveals compositional and functional differences in fungal communities among Amazonian canga formations. 2023. Fungal Ecology. 61: 101209. PDF
Brunes, T.O.; Pinto, F.C.S.; Taucce, P.P.G.; Santos, M.T.T.; Nascimento, L.B.; Carvalho, D.C.; Oliveira, G.; Vasconcelos, S.; Leite, F.S.F. Traditional taxonomy underestimates the number of species of amphibians diverging in the mountains of southeastern Brazil since the Miocene (Hylidae: Bokermannohyla). 2023. Systematics and Biodiversity. 21:1. https://doi.org/10.1080/14772000.2022.2156001 PDF
2022
Batley, J., Hufton, A.L., Oliveira, G., Varshney, R.K. Global action on biodiversity may hinge on genetic data sharing agreement. 2022. Advanced Genetics. 3(220021):1-2. PDF
Munk, P.; Brinch, C.; Møller, F.D.; Petersen, T.N.; Hendriksen, R.S.; Seyfarth, A.M.; Kjeldgaard, J.S.; Svendsen, C.A.; van Bunnik, B.; Berglund, F.; Global Sewage Surveillance Consortium, Larsson, D.G.J.; Koopmans, M.; Woolhouse, M.; Aarestrup, F.M. Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance. 2022. Nature Communications. 13:7251. PDF (as part of the Global Sewage Surveillance Consortium)
Frederico, T.D., Nancucheo, I., Santos, W.C.B., Oliveira R.R.M., Buzzi, D.C., Pires, E.S., Silva, P.M.P., Lucheta, A.R., Alves, J.O., Oliveira, G., Bitencourt, J.A.P. Comparison of two acidophilic sulfidogenic consortia for the treatment of acidic mine water. 2022. Frontiers in Bioengineering and Biotechnology. 2022. 10:1048412. PDF
Oliveira, R.S.M., Vasconcelos, S., Oliveira, G. SPLACE: a tool to automatically SPLit, Align and ConcatenatE genes for phylogenomic inference of several organisms. 2022. Frontiers in Bioinformatics. 2:10.3389/fbinf.2022.1074802. PDF
Nunes, G.L., Alves, R.,Vasconcelos, S., Oliveira, G. Ferramentas moleculares para o estudo da fauna cavernícola. In 131-143, Zampaulo, R.A., Prous, X. Fauna cavernícola do Brasil. 2022. Rupestre. ISBN 978-65-87864-05-6 PDF
Maia, U.M. Santos-Júnior, J.E., Molina, M., Galaschi-Teixeira, J., Carvalho, A.T., Miranda, L., Imperatriz- Fonseca, V.L., Oliveira, G., Giannini, T. Evidence for morphological and genetic structuring of Plebeia flavocincta (Apidae: Meliponini) populations in Northeast Brazil. 2022. Front. Ecol. Evol. 10:1-9. 10.3389/fevo.2022.1057624. PDF
Nascimento, S.V., Herrera, H., Costa, P.H.O., Trindade, F.C., Costa, I.R.C., Caldeira, C.F., Gastauer, M., Ramos, S.J., Oliveira, G., Valadares, R.B.S. Molecular Mechanisms Underlying Mimosa acutistipula Success in Amazonian Rehabilitating Minelands. 2022. Int. J. Environ. Res. Public Health. 19:14441. PDF
Maia, U.M., Borges, R.C., Santos-Júnior, J.E., Dias, V.H.P., Carvalho, A.T., Imperatriz-Fonseca, V.L., Oliveira, G., Giannini, T.C. Species redescription and nest architecture of Plebeia flavocincta (Hymenoptera: Apidae: Meliponini). 2022. Apidologie. 53:63. PDF
Bitencourt, J., Scholte, L., Oliveira, R.R., Morais, D.K., Nunes, G., Ñancucheo, I., Valadares, R., Holmes, D., Johnson, D., Alves, R., Oliveira, G. Draft Genome Sequence of a Novel Moderately Thermophilic, Iron- and Sulfur-Oxidizing Firmicute strain Y002, Isolated from an Extremely Acidic Geothermal Environment. 2022. Microbiology Resource Announcements. 11(6):1-3. PDF
Oliveira, R.R.M., Negri, T.C., Nunes, G., Medeiros, I., Araújo, G., Silva, F.O., Souza, J.E.S., Alves, R., Oliveira, G. PipeCoV: a pipeline for SARS-CoV-2 genome assembly, annotation and variant identification. 2022. PeerJ 10:e13300. PDF
Fonseca, P.L.C., Skaltsas, D., Silva, F.F., Kato, R.B., Castro, G.M., García, G.J.Y., Quintanilha-Peixoto, G., Mendes, Pereira, T., Carmo, A.O., Aguiar, E.R.G.R., Carvalho, D.S., Costa-Rezende, D.H., Drechsler-Santos, E.R., Badotti, F., Ferreira-Silva, A., Oliveira, G., Chaverri, P., Vaz, A.B.M., Góes-Neto, A. An integrative view of phylosphere mycobiome of native rubber trees in the Brazilian Amazon. 2022. Journal of Fungi. 8(4), 373. PDF
Laux, M., Oliveira, R.R.M., Vasconcelos, S., Pires, E.S., Lima, T.G.L., Pastore, M., Nunes, G.L., Alves, R., Oliveira, G. New plastomes of eight Ipomoea species and four putative hybrids from Eastern Amazon. 2022. PLoS One. 17(3): e0265449. PDF
Nascimento, S.V., Costa, P.H.O., Echeverria, H.A., Caldeira, C.F., Gastauer, M., Ramos, S.J., Oliveira, G., Valadares, R.B.S. Proteomic profiling and rhizosphere-associated microbial communities reveal adaptive mechanisms of Dioclea apurensis Kunth in eastern Amazon's rehabilitating minelands. 2022 Plants. 11(5):712. PDF
Dias, M.C., Caldeira, C., Gastaure, M., Ramos, S., Oliveira, G. Cross-species transcriptomes reveal species-specific and shared molecular adaptations for plants development on iron-rich rocky outcrops soils. 2022. BMC Genomics. 23:313. PDF.
Platt II, R.N., Clec'h, W.L., Chevalier, F.D., McDew-White, M., LoVerde, P.T., Assis, R.R., Oliveira, G., Kinunghi, S., Djirmay, A.G., Steinauer, M.L., Gouvras, A., Rabone, M., Webster, B.L., Webster, J., Emery, A., Rollinson, D., Anderson, T.J.C. Genomic analysis of a parasite invasion: colonization of the New World by the blood fluke, Schistosoma mansoni. Molecular Ecology. 2022. 31(8): 2242-2263. PDF
Scholz, A.H., Freitag, J., Lyal, C.H.C., Sara, R., Cepeda, M.L., Cancio, I., Sett, S., Hufton, A., Abebaw, Y., Bansal, K., Benbouza, H., Boga, H.I., Brisse, S., Bruford, M., Clissold, H., Cochrane, G., Coddington, J., Deletoille, A.C., García-Cardona, F., Hamer, M., Ortiz, R.H., Miano, D.W., Nicholson, D., Oliveira, G., Bravo, C.O., Rohden, F., Seberg, O., Segelbacher, G., Shouche, Y., Sierra, A., Silva, J., Silva, M., Suzuki, M., Tesfaye, K., Tiambo, C.K., Tolley, K.A., Varshney, R., Zambrano, M.M., Overmann, J. A practical multilateral framework for digital sequence information that reinforces biodiversity conservation. 2022, Nat Commun 13, 1086. PDF
Gales, S.M., Ready, J.S., Sabaj, M.H., Bernt, M.J., Silva, D.J.F., Oliveira, C., Oliveira, G., Sales, J.B.L. Molecular diversity and historical phylogeography of the widespread genus Mastiglanis (Siluriformes: Heptapteridae) based on palaeogeographical events in South America. 2022. Biological Journal of the Linnean Society. 135 (2):322-335. PDF
Farias, J.C., Vasconcelos, S., Oliveira, G., Santos, N., Sotero-Caio, C.G. Complete mitochondrial genome of the greater round-eared bat, Tonatia bidens (Chiroptera: Phyllostomidae) from Brazil and phylogenetic relationships within the family. 2022. Mitochondrial DNA Part B: Resources. 7:2, 323-325. PDF
Ribeiro, P.G., Martins, G.C., Gastauer, M., Silva Junior, E.D., Santos, D.C., Caldeira Júnior, C.F., Cavalcante, R.B.L., Santos, D.S., Carneiro, M.A.C., Valadares, R.B.S., Nascimento Junior, W.R., Oliveira, G., Souza Filho, P.W.M., Ramos, S.J. Spectral and soil quality index for monitoring environmental rehabilitation and soil carbon stock in an Amazonian sandstone mine. 2022. Sustainability. 14(2), 597. PDF
2021
Oliveira R.R.M., Silva R., Nunes G.L., Oliveira G. (2021) PIMBA: A PIpeline for MetaBarcoding Analysis. In: Stadler P.F., Walter M.E.M.T., Hernandez-Rosales M., Brigido M.M. (eds) Advances in Bioinformatics and Computational Biology. BSB 2021. Lecture Notes in Computer Science, vol 13063. Springer, Cham. PDF
Costa, P.H.O., Nascimento, S.V., Herrera, H., Gastauer, M., Ramos, S.J., Caldeira, C.F., Oliveira, G., Valadares, R.B.S., Non-specific interactions of rhizospheric microbial communities support the establishment of Mimosa acutistipula var. férrea in an Amazon rehabilitating mineland. 2021. Processes. 9:2079. PDF
Costa, P.H.O., Nascimento, S.V., Herrera, H., Gastauer, M., Ramos, S.J., Caldeira, C.F., Oliveira, G., Valadares, R.B.S., Non-specific interactions of rhizospheric microbial communities support the establishment of Mimosa acutistipula var. férrea in an Amazon rehabilitating mineland. 2021. Processes. 9:2079. PDF
Barbosa-Silva, R., Coutinho, T.S., Vasconcelos, S., Silva, D.F., Oliveira, G., Zappi, D. Preliminary placement and new records of an overlooked Amazonian tree Christiana mennegae (Malvaceae). 2021. Peer J. 2021. 9:e12244. PDF
Aguiar, L.M.S., Rocha, I.D.B., Nunes, G.L., Oliveira, G., Vasconcelos, S., Pires, E., Frizzas, M.R., Togni, M.R. Going out for dinner - The consumption of agriculture pests by bats in urban areas. 2021. PLoS One. 16(10): e0258066. PDF
Matosinho, C.G.R., Silva, M.V.G.B., Rosse, I., Fonseca, P., Silva, F., Peixoto, M.G.C.D., Salim, A., Arbex, W., Machado, M., Verneque, R., Martins, M., Oliveira, G., Santos, F.G., Carvalho, M.R., Pires, D., Carvalho, M.R. Identification and in silico characterization of structural and functional impacts of genetic variants in milk protein genes in the zebu breeds Guzerat and Gyr. 2021. Tropical Animal Health and Production. 53(6):524. PDF
Acosta, A.L., Tavares, V., Oliveira, G., Trevelin, L.C., Alves, R. Marques, N., Giannini, T.C. Biodiversity 4.0: Standardizing biodiversity protocols for the private sector. Biodiversity Information Science and Standards. 2021. 5: e75652. PDF
Trindade, F.C., Gastauer, M., Ramos, S.J., Caldeira, C.F., Araújo, J.F., Oliveira, G., Valadares, R.B.S. Soil metaproteomics as a tool for envivonmental monitoring of minelands. Forests. 2021. 12:1158. PDF
Vasconcelos, S., Nunes, G.L., Dias, M.C., Lima, J.L.R., Lima, T.G.L., Oliveira, R.M., Pires, E.S., Valadares, R.B.S., Alves, R., Watanabe, M.T.C., Zappi, D.C., Hiura, A.L., Pastore, M., Vasconcelos, L.V., Mota, N.F.O., Viana, P.L., Gil, A.S.B., Simões, A.O., Imperatriz-Fonseca, V.L., Harley, R.H., Giulietti, A.M., Oliveira, G. Unravelling the plant diversity of the Amazonian canga through DNA barcoding. Ecology and Evolution. 2021.11(9): 13348-13362. PDF
Gastaurer, M. Sarmento, P.S.M., Caldeira, C., Castro, AF., Ramos, S., Medeiros, P.S., Trevelin, L., Jaffe, R., Rosa, G.A., Carneiro, M.A.C., Valadares, R.B., Oliveira, G., Souza, P.M. Shannon tree diversity is a surrogate for mineland rehabilitation status. Ecological Indicators. 2021. 130: 108100. PDF
Caldeira, C.F., Lopes, A.V.S., Aguiar, K.C., Ferreira, A.L., Araújo, J.V.S., Gomes, V.M.S., Zandonadi, D.B., Abranches, C.b., Ramos, S.J., Gastauer, M., Campos, N.V., Gestinari, L.M.S., Prado, L.A., Santos, F.M.G., Martins, R.L., Estevers, F.A., Oliveira, G., Santos, M.P. Distinct reproductive strategy of two endemic Amazonian quillworts. 2021. Diversity. 13:348. PDF
Ras, V., Carvajal-Lopez, P., Gopalasingam, P., Matimba, A., Chauke, P., Mulder, N., Guerfali, F.Z., Del Angel, V.D., Reyes, A., Oliveira, G., De Las Rivas, J., Cristancho, M. Challenges and Considerations for Delivering Bioinformatics Training in LMICs: Perspectives from Pan-African and Latin American Bioinformatics Networks. 2021. Frontiers in Education. 6:278. PDF
Moore, B., Carvajal-López, P., Chauke, P.A., Cristancho, M., Del Angel, V.D., Fernandez-Valverde, S.L., Gopalasingam, P., Ghouila, A., Guerfali, F.Z., Matimba, A., Morgan, S.L., Oliveira, G., Ras, V., Reyes, A., De Las Rivas, J., Mulder, N. Ten simple rules for organising a bioinformatics training course in a low-middle income country. PLoS Computational Biology. 2021. 17(8): e10092180. PDF
Dalapicolla, J., Alves, R., Jaffé, R., Vasconcelos, S., Pires, E.S., Nunes, G.L., Pereira, J.B.S., Guimarães, J.T.F., Dias, M.C., Fernandes, T.N., Scherer, D., Santos, F.M.G., Castilho, A., Santos, M.P., Calderón, E.N., Martins, R.L., Fonseca, R.N., Esteves, F.A., Caldeira, C.F., Oliveira, G. Conservation implications of genetic structure in the narrowest endemic quillwort from the Eastern Amazon. Ecology and Evolution. 2021;11:10119-10132. PDF
Dillon, M.R., Bolyen, E., Adamov, A., Belk, A., Borsom, E., Burcham, Z., Debelius, J.W., Deel, H., Emmons, A., Estaki, M., Herman, C., Keefe, C.R., Morton, J.T., Oliveira, R.R.M., Sanchez, A., Simard, A., Vázquez-Baeza, Y., Ziemski, M., Miwa, H.E., Kerere, T.A., Coote, C., Bonneau, R., Knight, R., Oliveira, G., Gopalasingam, P., Kaehler, B.D., Cope, E.K., Metcalf, J.L., Robeson II, M.S., Bokulich, N.A., Caporaso, J.G. Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. 2021. PloS Comp Biol. 17: e1009056. PDF
Pereira, J., Prado, J., Harley, A.M.G., Vasconcelos, S., Caldeira, C., Watanabe, M., Sotero, D., Oliveira, R.R.O., Pires, E., Oliveira, G. Plastome-based phylogenomics elucidate relationships in rare Isoëtes species groups from the Neotropics. 2021. Molecular Phylogenetics and Evolution. 161, 107177. PDF
Ribas, T.F.A, Sales, J.B.L., de Boer, H., Anmarkrud, J.A., Oliveira, R.R.M., Laux, M., Rosa, F.A.S., Oliveira, G., Postuma, F.A., Gasalla, M.A., Ready, J.S. Unexpected diversity in the diet of Doryteuthis sanpaulensis (Brakoniecki, 1984) (Mollusca: Cephalopoda) from the southern Brazilian sardine fishery identified by metabarcoding. 2121. Fisheries Research. 238:105936. PDF
Vaca, H.R., Celentano, A.M., Toscanini, A., Heimburg, T., Ghazy, E., Zeyen, P., Hauser, A., OliveiraG., Elissondo, M.C., Jung, M., Sippl, W., Camicia, F., Rosenzvit, M. The potential for histone deacetylase (HDAC) inhibitors as cestocidal drugs. 2121. PLoS NTD. 15(3). e0009226. PDF
Pereira, J.B.S., Giulietti, A.M., Pires, E.S., Laux, M., Watanabe, M.C.T, Oliveira, R.R.M., Vasconcelos, S., Oliveira, G. Chloroplast Genomes of key species shed light on the evolution of the ancient genus Isoetes. Journal of Systematics and Evolution. 2021. 59(3):429-441 PDF
Vasconcelos, S., Oliveira, R., Pires, E., Pietrobon, T., Prous, X., Asenjo, A., Oliveira, G. Complete mitochondrial genome of a cave dwelling Desmopachria (Insecta: Coleoptera: Dytiscidae) from the Eastern Amazon. 2021. Mitochondrial DNA Part B: Resources. 6(2): 415–417. PDF
2020
Chagas, G.C.A., Espírito-Santo, J.C.A., Ferreira, N.R., Marques-da-Silva, S.H., Oliveira, G., Vasconcelos, S., Almeida, S.F.O., Silva, L.R.C., Gobira, R.M., Figueiredo, H.M., Lopes, A.S. Yeast isolation and identification during on-farm cocoa natural fermentation in a highly producer region in northern Brazil2020. Scientia Plena. 16(12):1-10. PDF
Lynggaard, C., Yu, D., Oliveira, G., Caldeira, C., Ramos, S., Ellegaard, M.R., Gilbert, M.T., Gastauer, M., Bohmann, K. DNA-based arthropod diversity assessment in Amazonian iron mine lands show ecological succession towards undisturbed reference sites. Frontiers Ecology And Evolution. 2020. 8:590976. PDF
Santos, M.P., Araujo, J.V.S.R., Lopes, A.V.S, Vettorazzi, J.C.F., Boechat, M.S.B., Arêdes, F.A., Campos, N.V., Calderon, E.N., Santos, F.M.G., Fernandes, T.N., da Fonseca, R.N., Pereira, M.G., Oliveira, G., Zandonadi, D.B., Martins, R., Esteves, F.A. 2020. The genetic diversity and population structure of two endemic Amazonian quillwort (Isoetes L.) species. PeerJ. 2020 8:e10274 PDF
Nunes, G., Oliveira, R., Pires, E., Pietrobon, T., Prous, X., Oliveira, G. Complete mitochondrial genome of Glomeridesmus spelaeus (Diplopoda, Glomeridesmida), a troglobitic species from iron-ore caves in Eastern Amazon. Mitochondrial DNA Part B: Resources. 2020. 5(3):3290-3291. PDF
Nieuwenhuijse, D.f., Munnink, B.B.O., Phan, M.V.T., The Global Sewage Surveillance Project Consortium, Munk, P., Venkatakrishnan, S., Aarestrup, F.M., Cotton, M., Koopmans, M.P.G. Setting a baseline for global urban virome surveillance in sewage. Scientific Reports. 2020. 10, 13748 (2020). https://doi.org/10.1038/s41598-020-69869-0 PDF
Gagen, E., Levett, A., Paz, A., Bostelmann, H., Valadares, R.B.S., Bittencourt, J.A.P., Gastauer, M., Nunes, G.L., Oliveira, G., Vasconcelos, P.M., Tyson, G.W., Southam, G. Accelerating microbial iron cycling promotes re-cementation of surface crusts in iron ore regions. Microbial Biotechnology. 2020. 13(6):1960-1971. https://doi.org/10.1111/1751-7915.13646. PDF
Maia, U., Carvalho, A., Imperatriz-Fonseca, V.L., Oliveria, G., Gianninni, T.C. Climate-induced Distribution Dynamics of Plebeia flavocincta, a Stingless Bee from Brazilian Tropical Dry Forests. Ecology and Evolution. 2020; 00: 1– 9. https://doi.org/10.1002/ece3.6674 PDF
Trindade, F. C., Ramos, S.J., Gastauer, M., Saraiva, A.M.M., Caldeira, C.F., Oliveira, G., Valadares, R.B.S. Metaproteomic analysis from a ferruginous rocky outcrop soil from Southeastern Brazil. Pedobiologia Journal of Soil Ecology. 2020. 81-82, 150664. PDF
Zappi, D.C., Vasconcelos, S., Watanabe, M.T.C., Oliveira, G., Oliveira, R.R.M., Pires, E.S., Harley, R.M., Giulietti, A.M. The phylogenetic placement of a new species of Belemia in Nyctaginaceae, and the first plastome description for the genus. Systematics and Biodiversity. 2020. 18(4):328-337. doi.org/10.1080/14772000.2020.1759728 PDF
Gastauer, M., Siqueira, J.O., Caldeira, C., Carneiro, M.A.C., Louzeiro, F., Pires, E., Vera, M., Jaffer, R., Ramos, S., Oliveira, G., Souza, P.M. Integrating environmental variables by multivariate ordination enables the reliable estimation of mineland rehabilitation status. Journal of Environmental Management. 2020. 256:109894. PDF
2019
Gonçalves-Oliveira, R., Ximenes, A.F., Vasconcelos, S., Leme, E., Oliveira, A.R., Carvalho-Filho, N., Oliveira, G., Camos, J.M.S., Brasileiro-Vidal, A.C., Viccini, L.F., Benko-Iseppon, A.M. Genome Size and Karyotype Diversity in Hohenbergia (Bromeliaceae, Bromelioideae). Biological Journal of the Linnean Society. 2019. Biological Journal of the Linnean Society. 2019. 192(4):900-909. PDF
Carvalho, C.S., Lanes, E.C.M., Silva, A.R., Caldeira, C.F., Carvalho-Filho, N., Gastauer, M., Imperatriz-Fonseca, V.L., Nascimento, W., Oliveira, G., Siqueira, J.O., Viana, P.L., Jaffe. R. Habitat loss does not always entail negative genetic consequences. 2019. Frontiers in Genetics. 10:1101. PDF
Ramos, S.J., Gastaure, M., Mitre, S.K., Caldeira, C.F., Silva, J.R., Furtini Neto, A.E., Oliveira, G., Souza-Filho, P.W.M., Siqueira, J.O. Plant Growth and nutriente use efficiency of two native Fabacea species for mineland revegetation in the eastern Amazon. Journal of Forestry Research. 2019. doi.org/10.1007/s11676-019-01004-w PDF
Gava, S., Tavares, N.C., Falcone, F.H., Oliveira, G., Mourão, M.M. Profiling transcriptional regulation and functional roles of Schistosoma mansoni c-Jun N-terminal kinase. 2019. Frontiers in Genetics. 10:1036. PDF
Lynggaard, C., Nielsen, M., Santos‐Bay, L., Gastauer, M., Oliveira, G., Bohmann, K. Vertebrate diversity revealed by metabarcoding of bulk arthropod samples from tropical forests. 2019. Environmental DNA. 1:329–341. PDF
Lemos, L.N., Medeiros, J.D., Dini-Andreote, F., Fernandes, G.R., Varani, A.M., Oliveira, G., Pylro, V.S. Genomic signatures and co-occurrence patterns of the ultra-small Saccharimonadia (CPR/Patescibacteria phylum) suggest a symbiotic lifestyle. 2019. Molecular Ecology. 28(18):4259-4271. PDF
Maldonado, L.L., Arrabal, J.P., Rosenzvit, M.C., Oliveira, G., Kamenetzky, L. Revisiting the phylogenetic history of helminthes through genomics, the case of the new Echinococcus oligarthrus genome. Frontiers in Genetics. 2019. Frontiers in Genetics. 708. PDF
Giannattasio-Ferraz, S., Laguardia-Nascimento, M., Gasparini, M.R., Leite, L.R., Araujo, F.M.G., Salim, A.C.M., Oliveira, A.P., Nicoli, J.R., Fonseca, F.G., Oliveira, G., Barbosa-Stancioli, E.F. 2019. A common vaginal microbiota composition among breeds of Bos taurus indicus (Gyr and Nellore). Brazilian Journal of Microbiology. 50(4):1115-1124. https://doi.org/10.1007/s42770-019-00120-3. PDF
Darnet, S., Dragalzew, A.C., Amaral, D.B., Sousa, J.F., Thompson, A.W., Cass, A.N., Lorena, J., Pires, E.S., Costa, C.M., Sousa, M.P., Fröbisch, N.B., Oliveira, G., Schneider, P.N., Davis, M.C., Braasch, I., Schneider, I. Deep evolutionary origin of limb and fin regeneration. 2019. PNAS. 201900475. PDF.
Araújo, J.A., Ferreira, N.R., Silva, S.H.M., Oliveira, G., Monteiro, R.C., Alves, Y.F.M., Lopes, A.S. Filamentous Fungal Diversity from Natural Fermentation of the Amazonian Cocoa Beans and Microbial Enzymes Activities. 2019. Annals of Microbiology. 1-13. PDF
Jaffé, R., Veiga, J.C., Alves, R., Andrade, S., Arias, M.C., Bonatti, V., Carvalho, A.T., Castro, M., Contrera, F.A.L., Francoy, T.M., Freitas, B.M., Giannini, T.C., Lanes, E.C.M., Martins, C.F., Oliveira, G., Saraiva, A.M., Souza, B.A., Imperatriz-Fonseca, V.L. Landscape genomics to the rescue of a tropical bee threatened by habitat loss and climate change. 2019. Evolutionary Applications. 12:1164-1177. Evolutionary Applications. 1-14. PDF
Oliveira, G., et al. (2018). Série Fiocruz. Coleção Saúde, Ambiente e Sustentabilidade. Biodiversidade e Saúde. Complexidades, construções e desafios. Editora Fiocruz, Rio de Janeiro, RJ. ISBN: 978-85-8110-064-7 PDF
Gagen, E.J., Levetta, A., Paza, A., Gastauer, M., Caldeira, C.F., Valadares, R.B.S., Bitencourt, J.A.P., Alves, R., Oliveira, G., Siqueira, J.O., Vasconcelos, P.M., Southam, G. Biogeochemical processes in canga ecosystems: Armoring of iron ore against erosion and importance in iron duricrust restoration in Brazil. 2019. Ore Geology Reviews. 107:573-586. PDF
Basika, T., Paludo, G.P., Araujo, F.M., Salim, A.C., Pais, F., Maldonado, L., Macchiaroli, N., Camargo de Lima, J., Rosenzvit, M., Oliveira, G., Kamenetzky, L., Ferreira, H.B. Transcriptomic profile of two developmental stages of the cestode parasite Mesocestoides corti. 2019. Molecular and Biochemical Parasitology. 229, 35-46. PDF
Ñancucheo, I., Oliveira, G., Lopes, M., Johnson, D.B. Reductive dissolution as a pretreatment for recalcitrante rare-earth phosphate minerals associated with lateritic ores. 2019. Minerals. 9(3):136. PDF
Holguín, A.V., Cárdenas, P., Rabelo, L., Prada-Peñaranda, C., Buitrago, C., Clavijo, V., Oliveira, G., Leekitcharoenphon, P., Møller, F., Vives, M. Host resistance, genomics and population dynamics in a Salmonella enteriditis and Phage system. 2019. Viruses. 11(2), 188. PDF
Gastauer, M., Vera, M.P.O., Souza, K.P., Pires, E.S., Alves, R., Caldeira, C.F., Ramos, S.J., Oliveira, G. A metagenomic survey of soil microbial communities along a rehabilitation chronosequence after iron ore mining. 2019. Nature Scientific Data. 6. PDF
Silva, P.M.P., Lucheta, A.R., Bitencourt, J.A.P., Carmo, A. L.V., Cuevas, I.P.N., Siqueira, J.O., Oliveira, G., Alves, J.O. Covellite (CuS) production from a real acid mine drainage treated with biogenic H2S. 2019. Metals. 9(2), 206-215. PDF
Cuesta-Astroz, Y., Santos, A., Oliveira, G., Jensen, L.J. Analysis of predicted host–parasite interactomes reveals commonalities and specificities related to parasitic lifestyle and tissues tropism. 2019. Frontiers in Immunolgy. Accepted.
Trevelin, L.C., Gastauer, M., Prous, X., Nicácio, G., Zampaulo, R., Brandi, I., Oliveira, G., Siqueira, J.O., Jaffé, R. Biodiversity surrogates in Amazonian iron cave ecosystems. 2019. Ecological Indicators. 101, 813-820. PDF
Hendriksen, R.S., Munk, P., Njage, P., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Pedersen, S.K., Kjeldgaard, J., Kaas, R.S., Clausen, P.T.L.C., Vogt, J.K., Leekitcharoenphon, P., van de Schans, M.G.M., Zuidema, T., Husman, A.M.R., Rasmussen, S., Petersen, B., Oliveira, G., the Global Sewage Surveillance project consortium, Amid, C., Cochrane, G., Sicheritz-Ponten, T., Schmitt, H., Alvarez, J.R.M., Aidara-Kane, A., Pamp, S.J., Lund, O., Hald, T., Woolhouse, M., Koopmans, M., Vigre, H., Petersen, T.N., Aarestrup, F.M. Global monitoring of antimicrobial resistance based on human sewage. 2019. Nature Communications. 10, Article number: 1124. PDF
Avelar, L.G.A., Gava, S.G., Neves, R.H., Silva, M.C.S., Araújo, N., Tavares, N.C., Khal, A.E., Matos, A.C.A., Machado-Silva, J.R., Oliveira, G., Mourão, M.M. Smp38 MAP kinase regulation in Schistosoma mansoni: roles in survival, oviposition and protection against oxidative stress. 2019. Frontiers in Immunology. 4:1, 420-422. PDF
Dias, M., Oliveira, R.R.M., Vasconcelos, S., Pires, E.S., Pietrobon, T., Prous, X., Oliveira, G. Complete mitochondrial genome of a troglophile Cydnidae (Hemiptera). 2018. Mitochondrial DNA Part B: Resources. 4:1, 420-422. PDF
Ramos, S.J., Gastauer, M., Mitre, S.K., Caldeira, C.F., Silva, J.R., Furtini Neto, A.E., Oliveira, G., Souza-Filho, P.W.M., Siqueira, J.O. Growth and nutrient response of native plants for iron mining rehabilitation in Amazon Forest. 2018. Journal of Forestry Research. Accepted.
Oliveira, R.R.M., Vasconcelos, S., Pires, E.S., Prous, X., Oliveira, G. Complete mitochondrial genomes of three troglophile cave spiders (Mesabolivar, Pholcidae). 2019. Mitochondrial DNA Part B, 4:1, 251-252. PDF