peer reviwed publications
2022
Oliveira, R.R.M., Negri, T.C., Nunes, G., Medeiros, I., Araújo, G., Silva, F.O., Souza, J.E.S., Alves, R., Oliveira, G. PipeCoV: a pipeline for SARS-CoV-2 genome assembly, annotation and variant identification. 2022. PeerJ 10:e13300. PDF
Fonseca, P.L.C., Skaltsas, D., Silva, F.F., Kato, R.B., Castro, G.M., García, G.J.Y., Quintanilha-Peixoto, G., Mendes, Pereira, T., Carmo, A.O., Aguiar, E.R.G.R., Carvalho, D.S., Costa-Rezende, D.H., Drechsler-Santos, E.R., Badotti, F., Ferreira-Silva, A., Oliveira, G., Chaverri, P., Vaz, A.B.M., Góes-Neto, A. An integrative view of phylosphere mycobiome of native rubber trees in the Brazilian Amazon. 2022. Journal of Fungi. Accepted.
Laux, M., Oliveira, R.R.M., Vasconcelos, S., Pires, E.S., Lima, T.G.L., Pastore, M., Nunes, G.L., Alves, R., Oliveira, G. New plastomes of eight Ipomoea species and four putative hybrids from Eastern Amazon. 2022. PLoS One. 17(3): e0265449. PDF
Nascimento, S.V., Costa, P.H.O., Echeverria, H.A., Caldeira, C.F., Gastauer, M., Ramos, S.J., Oliveira, G., Valadares, R.B.S. Proteomic profiling and rhizosphere-associated microbial communities reveal adaptive mechanisms of Dioclea apurensis Kunth in eastern Amazon's rehabilitating minelands. 2022 Plants. 11(5):712. PDF
Dias, M.C., Caldeira, C., Gastaure, M., Ramos, S., Oliveira, G. Cross-species transcriptomes reveal species-specific and shared molecular adaptations for plants development on iron-rich rocky outcrops soils. 2022. BMC Genomics. 23:313. PDF.
Platt II, R.N., Clec'h, W.L., Chevalier, F.D., McDew-White, M., LoVerde, P.T., Assis, R.R., Oliveira, G., Kinunghi, S., Djirmay, A.G., Steinauer, M.L., Gouvras, A., Rabone, M., Webster, B.L., Webster, J., Emery, A., Rollinson, D., Anderson, T.J.C. Genomic analysis of a parasite invasion: colonization of the New World by the blood fluke, Schistosoma mansoni. Molecular Ecology. 2022. 31(8): 2242-2263. PDF
Scholz, A.H., Freitag, J., Lyal, C.H.C., Sara, R., Cepeda, M.L., Cancio, I., Sett, S., Hufton, A., Abebaw, Y., Bansal, K., Benbouza, H., Boga, H.I., Brisse, S., Bruford, M., Clissold, H., Cochrane, G., Coddington, J., Deletoille, A.C., García-Cardona, F., Hamer, M., Ortiz, R.H., Miano, D.W., Nicholson, D., Oliveira, G., Bravo, C.O., Rohden, F., Seberg, O., Segelbacher, G., Shouche, Y., Sierra, A., Silva, J., Silva, M., Suzuki, M., Tesfaye, K., Tiambo, C.K., Tolley, K.A., Varshney, R., Zambrano, M.M., Overmann, J. A practical multilateral framework for digital sequence information that reinforces biodiversity conservation. 2022, Nat Commun 13, 1086. PDF
Gales, S.M., Ready, J.S., Sabaj, M.H., Bernt, M.J., Silva, D.J.F., Oliveira, C., Oliveira, G., Sales, J.B.L. Molecular diversity and historical phylogeography of the widespread genus Mastiglanis (Siluriformes: Heptapteridae) based on palaeogeographical events in South America. 2021. Biological Journal of the Linnean Society. Accepted.
Farias, J.C., Vasconcelos, S., Oliveira, G., Santos, N., Sotero-Caio, C.G. Complete mitochondrial genome of the greater round-eared bat, Tonatia bidens (Chiroptera: Phyllostomidae) from Brazil and phylogenetic relationships within the family. 2022. Mitochondrial DNA Part B: Resources. 7:2, 323-325. PDF
Ribeiro, P.G., Martins, G.C., Gastauer, M., Silva Junior, E.D., Santos, D.C., Caldeira Júnior, C.F., Cavalcante, R.B.L., Santos, D.S., Carneiro, M.A.C., Valadares, R.B.S., Nascimento Junior, W.R., Oliveira, G., Souza Filho, P.W.M., Ramos, S.J. Spectral and soil quality index for monitoring environmental rehabilitation and soil carbon stock in an Amazonian sandstone mine. 2022. Sustainability. 14(2), 597. PDF
2021
Oliveira R.R.M., Silva R., Nunes G.L., Oliveira G. (2021) PIMBA: A PIpeline for MetaBarcoding Analysis. In: Stadler P.F., Walter M.E.M.T., Hernandez-Rosales M., Brigido M.M. (eds) Advances in Bioinformatics and Computational Biology. BSB 2021. Lecture Notes in Computer Science, vol 13063. Springer, Cham. PDF
Costa, P.H.O., Nascimento, S.V., Herrera, H., Gastauer, M., Ramos, S.J., Caldeira, C.F., Oliveira, G., Valadares, R.B.S., Non-specific interactions of rhizospheric microbial communities support the establishment of Mimosa acutistipula var. férrea in an Amazon rehabilitating mineland. 2021. Processes. 9:2079. PDF
Costa, P.H.O., Nascimento, S.V., Herrera, H., Gastauer, M., Ramos, S.J., Caldeira, C.F., Oliveira, G., Valadares, R.B.S., Non-specific interactions of rhizospheric microbial communities support the establishment of Mimosa acutistipula var. férrea in an Amazon rehabilitating mineland. 2021. Processes. 9:2079. PDF
Barbosa-Silva, R., Coutinho, T.S., Vasconcelos, S., Silva, D.F., Oliveira, G., Zappi, D. Preliminary placement and new records of na overlooked Amazonian tree Christiana mennegae (Malvaceae). 2021. Peer J. 2021. 9:e12244. PDF
Aguiar, L.M.S., Rocha, I.D.B., Nunes, G.L., Oliveira, G., Vasconcelos, S., Pires, E., Frizzas, M.R., Togni, M.R. Going out for dinner - The consumption of agriculture pests by bats in urban areas. 2021. PLoS One. 16(10): e0258066. PDF
Matosinho, C.G.R., Silva, M.V.G.B., Rosse, I., Fonseca, P., Silva, F., Peixoto, M.G.C.D., Salim, A., Arbex, W., Machado, M., Verneque, R., Martins, M., Oliveira, G., Santos, F.G., Carvalho, M.R., Pires, D., Carvalho, M.R. Identification and in silico characterization of structural and functional impacts of genetic variants in milk protein genes in the zebu breeds Guzerat and Gyr. 2021. Tropical Animal Health and Production. 53(6):524. PDF
Acosta, A.L., Tavares, V., Oliveira, G., Trevelin, L.C., Alves, R. Marques, N., Giannini, T.C. Biodiversity 4.0: Standardizing biodiversity protocols for the private sector. Biodiversity Information Science and Standards. 2021. 5: e75652. PDF
Trindade, F.C., Gastauer, M., Ramos, S.J., Caldeira, C.F., Araújo, J.F., Oliveira, G., Valadares, R.B.S. Soil metaproteomics as a tool for envivonmental monitoring of minelands. Forests. 2021. 12:1158. PDF
Vasconcelos, S., Nunes, G.L., Dias, M.C., Lima, J.L.R., Lima, T.G.L., Oliveira, R.M., Pires, E.S., Valadares, R.B.S., Alves, R., Watanabe, M.T.C., Zappi, D.C., Hiura, A.L., Pastore, M., Vasconcelos, L.V., Mota, N.F.O., Viana, P.L., Gil, A.S.B., Simões, A.O., Imperatriz-Fonseca, V.L., Harley, R.H., Giulietti, A.M., Oliveira, G. Unravelling the plant diversity of the Amazonian canga through DNA barcoding. Ecology and Evolution. 2021.11(9): 13348-13362. PDF
Gastaurer, M. Sarmento, P.S.M., Caldeira, C., Castro, AF., Ramos, S., Medeiros, P.S., Trevelin, L., Jaffe, R., Rosa, G.A., Carneiro, M.A.C., Valadares, R.B., Oliveira, G., Souza, P.M. Shannon tree diversity is a surrogate for mineland rehabilitation status. Ecological Indicators. 2021. 130: 108100. PDF
Caldeira, C.F., Lopes, A.V.S., Aguiar, K.C., Ferreira, A.L., Araújo, J.V.S., Gomes, V.M.S., Zandonadi, D.B., Abranches, C.b., Ramos, S.J., Gastauer, M., Campos, N.V., Gestinari, L.M.S., Prado, L.A., Santos, F.M.G., Martins, R.L., Estevers, F.A., Oliveira, G., Santos, M.P. Distinct reproductive strategy of two endemic Amazonian quillworts. 2021. Diversity. 13:348. PDF
Ras, V., Carvajal-Lopez, P., Gopalasingam, P., Matimba, A., Chauke, P., Mulder, N., Guerfali, F.Z., Del Angel, V.D., Reyes, A., Oliveira, G., De Las Rivas, J., Cristancho, M. Challenges and Considerations for Delivering Bioinformatics Training in LMICs: Perspectives from Pan-African and Latin American Bioinformatics Networks. 2021. Frontiers in Education. 6:278. PDF
Moore, B., Carvajal-López, P., Chauke, P.A., Cristancho, M., Del Angel, V.D., Fernandez-Valverde, S.L., Gopalasingam, P., Ghouila, A., Guerfali, F.Z., Matimba, A., Morgan, S.L., Oliveira, G., Ras, V., Reyes, A., De Las Rivas, J., Mulder, N. Ten simple rules for organising a bioinformatics training course in a low-middle income country. PLoS Computational Biology. 2021. 17(8): e10092180. PDF
Dalapicolla, J., Alves, R., Jaffé, R., Vasconcelos, S., Pires, E.S., Nunes, G.L., Pereira, J.B.S., Guimarães, J.T.F., Dias, M.C., Fernandes, T.N., Scherer, D., Santos, F.M.G., Castilho, A., Santos, M.P., Calderón, E.N., Martins, R.L., Fonseca, R.N., Esteves, F.A., Caldeira, C.F., Oliveira, G. Conservation implications of genetic structure in the narrowest endemic quillwort from the Eastern Amazon. Ecology and Evolution. 2021;11:10119-10132. PDF
Dillon, M.R., Bolyen, E., Adamov, A., Belk, A., Borsom, E., Burcham, Z., Debelius, J.W., Deel, H., Emmons, A., Estaki, M., Herman, C., Keefe, C.R., Morton, J.T., Oliveira, R.R.M., Sanchez, A., Simard, A., Vázquez-Baeza, Y., Ziemski, M., Miwa, H.E., Kerere, T.A., Coote, C., Bonneau, R., Knight, R., Oliveira, G., Gopalasingam, P., Kaehler, B.D., Cope, E.K., Metcalf, J.L., Robeson II, M.S., Bokulich, N.A., Caporaso, J.G. Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. 2021. PloS Comp Biol. 17: e1009056. PDF
Pereira, J., Prado, J., Harley, A.M.G., Vasconcelos, S., Caldeira, C., Watanabe, M., Sotero, D., Oliveira, R.R.O., Pires, E., Oliveira, G. Plastome-based phylogenomics elucidate relationships in rare Isoëtes species groups from the Neotropics. 2021. Molecular Phylogenetics and Evolution. 161, 107177. PDF
Ribas, T.F.A, Sales, J.B.L., de Boer, H., Anmarkrud, J.A., Oliveira, R.R.M., Laux, M., Rosa, F.A.S., Oliveira, G., Postuma, F.A., Gasalla, M.A., Ready, J.S. Unexpected diversity in the diet of Doryteuthis sanpaulensis (Brakoniecki, 1984) (Mollusca: Cephalopoda) from the southern Brazilian sardine fishery identified by metabarcoding. 2121. Fisheries Research. 238:105936. PDF
Vaca, H.R., Celentano, A.M., Toscanini, A., Heimburg, T., Ghazy, E., Zeyen, P., Hauser, A., OliveiraG., Elissondo, M.C., Jung, M., Sippl, W., Camicia, F., Rosenzvit, M. The potential for histone deacetylase (HDAC) inhibitors as cestocidal drugs. 2121. PLoS NTD. 15(3). e0009226. PDF
Pereira, J.B.S., Giulietti, A.M., Pires, E.S., Laux, M., Watanabe, M.C.T, Oliveira, R.R.M., Vasconcelos, S., Oliveira, G. Chloroplast Genomes of key species shed light on the evolution of the ancient genus Isoetes. Journal of Systematics and Evolution. 2021. 59(3):429-441 PDF
Vasconcelos, S., Oliveira, R., Pires, E., Pietrobon, T., Prous, X., Asenjo, A., Oliveira, G. Complete mitochondrial genome of a cave dwelling Desmopachria (Insecta: Coleoptera: Dytiscidae) from the Eastern Amazon. 2021. Mitochondrial DNA Part B: Resources. 6(2): 415–417. PDF
2020
Chagas, G.C.A., Espírito-Santo, J.C.A., Ferreira, N.R., Marques-da-Silva, S.H., Oliveira, G., Vasconcelos, S., Almeida, S.F.O., Silva, L.R.C., Gobira, R.M., Figueiredo, H.M., Lopes, A.S. Yeast isolation and identification during on-farm cocoa natural fermentation in a highly producer region in northern Brazil2020. Scientia Plena. 16(12):1-10. PDF
Lynggaard, C., Yu, D., Oliveira, G., Caldeira, C., Ramos, S., Ellegaard, M.R., Gilbert, M.T., Gastauer, M., Bohmann, K. DNA-based arthropod diversity assessment in Amazonian iron mine lands show ecological succession towards undisturbed reference sites. Frontiers Ecology And Evolution. 2020. 8:590976. PDF
Santos, M.P., Araujo, J.V.S.R., Lopes, A.V.S, Vettorazzi, J.C.F., Boechat, M.S.B., Arêdes, F.A., Campos, N.V., Calderon, E.N., Santos, F.M.G., Fernandes, T.N., da Fonseca, R.N., Pereira, M.G., Oliveira, G., Zandonadi, D.B., Martins, R., Esteves, F.A. 2020. The genetic diversity and population structure of two endemic Amazonian quillwort (Isoetes L.) species. PeerJ. 2020 8:e10274 PDF
Nunes, G., Oliveira, R., Pires, E., Pietrobon, T., Prous, X., Oliveira, G. Complete mitochondrial genome of Glomeridesmus spelaeus (Diplopoda, Glomeridesmida), a troglobitic species from iron-ore caves in Eastern Amazon. Mitochondrial DNA Part B: Resources. 2020. 5(3):3290-3291. PDF
Nieuwenhuijse, D.f., Munnink, B.B.O., Phan, M.V.T., The Global Sewage Surveillance Project Consortium, Munk, P., Venkatakrishnan, S., Aarestrup, F.M., Cotton, M., Koopmans, M.P.G. Setting a baseline for global urban virome surveillance in sewage. Scientific Reports. 2020. 10, 13748 (2020). https://doi.org/10.1038/s41598-020-69869-0 PDF
Gagen, E., Levett, A., Paz, A., Bostelmann, H., Valadares, R.B.S., Bittencourt, J.A.P., Gastauer, M., Nunes, G.L., Oliveira, G., Vasconcelos, P.M., Tyson, G.W., Southam, G. Accelerating microbial iron cycling promotes re-cementation of surface crusts in iron ore regions. Microbial Biotechnology. 2020. 13(6):1960-1971. https://doi.org/10.1111/1751-7915.13646. PDF
Maia, U., Carvalho, A., Imperatriz-Fonseca, V.L., Oliveria, G., Gianninni, T.C. Climate-induced Distribution Dynamics of Plebeia flavocincta, a Stingless Bee from Brazilian Tropical Dry Forests. Ecology and Evolution. 2020; 00: 1– 9. https://doi.org/10.1002/ece3.6674 PDF
Trindade, F. C., Ramos, S.J., Gastauer, M., Saraiva, A.M.M., Caldeira, C.F., Oliveira, G., Valadares, R.B.S. Metaproteomic analysis from a ferruginous rocky outcrop soil from Southeastern Brazil. Pedobiologia Journal of Soil Ecology. 2020. 81-82, 150664. PDF
Zappi, D.C., Vasconcelos, S., Watanabe, M.T.C., Oliveira, G., Oliveira, R.R.M., Pires, E.S., Harley, R.M., Giulietti, A.M. The phylogenetic placement of a new species of Belemia in Nyctaginaceae, and the first plastome description for the genus. Systematics and Biodiversity. 2020. 18(4):328-337. doi.org/10.1080/14772000.2020.1759728 PDF
Gastauer, M., Siqueira, J.O., Caldeira, C., Carneiro, M.A.C., Louzeiro, F., Pires, E., Vera, M., Jaffer, R., Ramos, S., Oliveira, G., Souza, P.M. Integrating environmental variables by multivariate ordination enables the reliable estimation of mineland rehabilitation status. Journal of Environmental Management. 2020. 256:109894. PDF
2019
Gonçalves-Oliveira, R., Ximenes, A.F., Vasconcelos, S., Leme, E., Oliveira, A.R., Carvalho-Filho, N., Oliveira, G., Camos, J.M.S., Brasileiro-Vidal, A.C., Viccini, L.F., Benko-Iseppon, A.M. Genome Size and Karyotype Diversity in Hohenbergia (Bromeliaceae, Bromelioideae). Biological Journal of the Linnean Society. 2019. Biological Journal of the Linnean Society. 2019. 192(4):900-909. PDF
Carvalho, C.S., Lanes, E.C.M., Silva, A.R., Caldeira, C.F., Carvalho-Filho, N., Gastauer, M., Imperatriz-Fonseca, V.L., Nascimento, W., Oliveira, G., Siqueira, J.O., Viana, P.L., Jaffe. R. Habitat loss does not always entail negative genetic consequences. 2019. Frontiers in Genetics. 10:1101. PDF
Ramos, S.J., Gastaure, M., Mitre, S.K., Caldeira, C.F., Silva, J.R., Furtini Neto, A.E., Oliveira, G., Souza-Filho, P.W.M., Siqueira, J.O. Plant Growth and nutriente use efficiency of two native Fabacea species for mineland revegetation in the eastern Amazon. Journal of Forestry Research. 2019. doi.org/10.1007/s11676-019-01004-w PDF
Gava, S., Tavares, N.C., Falcone, F.H., Oliveira, G., Mourão, M.M. Profiling transcriptional regulation and functional roles of Schistosoma mansoni c-Jun N-terminal kinase. 2019. Frontiers in Genetics. 10:1036. PDF
Lynggaard, C., Nielsen, M., Santos‐Bay, L., Gastauer, M., Oliveira, G., Bohmann, K. Vertebrate diversity revealed by metabarcoding of bulk arthropod samples from tropical forests. 2019. Environmental DNA. 1:329–341. PDF
Lemos, L.N., Medeiros, J.D., Dini-Andreote, F., Fernandes, G.R., Varani, A.M., Oliveira, G., Pylro, V.S. Genomic signatures and co-occurrence patterns of the ultra-small Saccharimonadia (CPR/Patescibacteria phylum) suggest a symbiotic lifestyle. 2019. Molecular Ecology. 28(18):4259-4271. PDF
Maldonado, L.L., Arrabal, J.P., Rosenzvit, M.C., Oliveira, G., Kamenetzky, L. Revisiting the phylogenetic history of helminthes through genomics, the case of the new Echinococcus oligarthrus genome. Frontiers in Genetics. 2019. Frontiers in Genetics. 708. PDF
Giannattasio-Ferraz, S., Laguardia-Nascimento, M., Gasparini, M.R., Leite, L.R., Araujo, F.M.G., Salim, A.C.M., Oliveira, A.P., Nicoli, J.R., Fonseca, F.G., Oliveira, G., Barbosa-Stancioli, E.F. 2019. A common vaginal microbiota composition among breeds of Bos taurus indicus (Gyr and Nellore). Brazilian Journal of Microbiology. 50(4):1115-1124. https://doi.org/10.1007/s42770-019-00120-3. PDF
Darnet, S., Dragalzew, A.C., Amaral, D.B., Sousa, J.F., Thompson, A.W., Cass, A.N., Lorena, J., Pires, E.S., Costa, C.M., Sousa, M.P., Fröbisch, N.B., Oliveira, G., Schneider, P.N., Davis, M.C., Braasch, I., Schneider, I. Deep evolutionary origin of limb and fin regeneration. 2019. PNAS. 201900475. PDF.
Araújo, J.A., Ferreira, N.R., Silva, S.H.M., Oliveira, G., Monteiro, R.C., Alves, Y.F.M., Lopes, A.S. Filamentous Fungal Diversity from Natural Fermentation of the Amazonian Cocoa Beans and Microbial Enzymes Activities. 2019. Annals of Microbiology. 1-13. PDF
Jaffé, R., Veiga, J.C., Alves, R., Andrade, S., Arias, M.C., Bonatti, V., Carvalho, A.T., Castro, M., Contrera, F.A.L., Francoy, T.M., Freitas, B.M., Giannini, T.C., Lanes, E.C.M., Martins, C.F., Oliveira, G., Saraiva, A.M., Souza, B.A., Imperatriz-Fonseca, V.L. Landscape genomics to the rescue of a tropical bee threatened by habitat loss and climate change. 2019. Evolutionary Applications. 12:1164-1177. Evolutionary Applications. 1-14. PDF
Oliveira, G., et al. (2018). Série Fiocruz. Coleção Saúde, Ambiente e Sustentabilidade. Biodiversidade e Saúde. Complexidades, construções e desafios. Editora Fiocruz, Rio de Janeiro, RJ. ISBN: 978-85-8110-064-7 PDF
Gagen, E.J., Levetta, A., Paza, A., Gastauer, M., Caldeira, C.F., Valadares, R.B.S., Bitencourt, J.A.P., Alves, R., Oliveira, G., Siqueira, J.O., Vasconcelos, P.M., Southam, G. Biogeochemical processes in canga ecosystems: Armoring of iron ore against erosion and importance in iron duricrust restoration in Brazil. 2019. Ore Geology Reviews. 107:573-586. PDF
Basika, T., Paludo, G.P., Araujo, F.M., Salim, A.C., Pais, F., Maldonado, L., Macchiaroli, N., Camargo de Lima, J., Rosenzvit, M., Oliveira, G., Kamenetzky, L., Ferreira, H.B. Transcriptomic profile of two developmental stages of the cestode parasite Mesocestoides corti. 2019. Molecular and Biochemical Parasitology. 229, 35-46. PDF
Ñancucheo, I., Oliveira, G., Lopes, M., Johnson, D.B. Reductive dissolution as a pretreatment for recalcitrante rare-earth phosphate minerals associated with lateritic ores. 2019. Minerals. 9(3):136. PDF
Holguín, A.V., Cárdenas, P., Rabelo, L., Prada-Peñaranda, C., Buitrago, C., Clavijo, V., Oliveira, G., Leekitcharoenphon, P., Møller, F., Vives, M. Host resistance, genomics and population dynamics in a Salmonella enteriditis and Phage system. 2019. Viruses. 11(2), 188. PDF
Gastauer, M., Vera, M.P.O., Souza, K.P., Pires, E.S., Alves, R., Caldeira, C.F., Ramos, S.J., Oliveira, G. A metagenomic survey of soil microbial communities along a rehabilitation chronosequence after iron ore mining. 2019. Nature Scientific Data. 6. PDF
Silva, P.M.P., Lucheta, A.R., Bitencourt, J.A.P., Carmo, A. L.V., Cuevas, I.P.N., Siqueira, J.O., Oliveira, G., Alves, J.O. Covellite (CuS) production from a real acid mine drainage treated with biogenic H2S. 2019. Metals. 9(2), 206-215. PDF
Cuesta-Astroz, Y., Santos, A., Oliveira, G., Jensen, L.J. Analysis of predicted host–parasite interactomes reveals commonalities and specificities related to parasitic lifestyle and tissues tropism. 2019. Frontiers in Immunolgy. Accepted.
Trevelin, L.C., Gastauer, M., Prous, X., Nicácio, G., Zampaulo, R., Brandi, I., Oliveira, G., Siqueira, J.O., Jaffé, R. Biodiversity surrogates in Amazonian iron cave ecosystems. 2019. Ecological Indicators. 101, 813-820. PDF
Hendriksen, R.S., Munk, P., Njage, P., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Pedersen, S.K., Kjeldgaard, J., Kaas, R.S., Clausen, P.T.L.C., Vogt, J.K., Leekitcharoenphon, P., van de Schans, M.G.M., Zuidema, T., Husman, A.M.R., Rasmussen, S., Petersen, B., Oliveira, G., the Global Sewage Surveillance project consortium, Amid, C., Cochrane, G., Sicheritz-Ponten, T., Schmitt, H., Alvarez, J.R.M., Aidara-Kane, A., Pamp, S.J., Lund, O., Hald, T., Woolhouse, M., Koopmans, M., Vigre, H., Petersen, T.N., Aarestrup, F.M. Global monitoring of antimicrobial resistance based on human sewage. 2019. Nature Communications. 10, Article number: 1124. PDF
Avelar, L.G.A., Gava, S.G., Neves, R.H., Silva, M.C.S., Araújo, N., Tavares, N.C., Khal, A.E., Matos, A.C.A., Machado-Silva, J.R., Oliveira, G., Mourão, M.M. Smp38 MAP kinase regulation in Schistosoma mansoni: roles in survival, oviposition and protection against oxidative stress. 2019. Frontiers in Immunology. 4:1, 420-422. PDF
Dias, M., Oliveira, R.R.M., Vasconcelos, S., Pires, E.S., Pietrobon, T., Prous, X., Oliveira, G. Complete mitochondrial genome of a troglophile Cydnidae (Hemiptera). 2018. Mitochondrial DNA Part B: Resources. 4:1, 420-422. PDF
Ramos, S.J., Gastauer, M., Mitre, S.K., Caldeira, C.F., Silva, J.R., Furtini Neto, A.E., Oliveira, G., Souza-Filho, P.W.M., Siqueira, J.O. Growth and nutrient response of native plants for iron mining rehabilitation in Amazon Forest. 2018. Journal of Forestry Research. Accepted.
Oliveira, R.R.M., Vasconcelos, S., Pires, E.S., Prous, X., Oliveira, G. Complete mitochondrial genomes of three troglophile cave spiders (Mesabolivar, Pholcidae). 2019. Mitochondrial DNA Part B, 4:1, 251-252. PDF
2018
Cuesta-Astroz Y., Oliveira G. (2018) Computational and Experimental Approaches to Predict Host–Parasite Protein–Protein Interactions. In: von Stechow L., Santos Delgado A. (eds) Computational Cell Biology. Methods in Molecular Biology, vol 1819. Humana Press, New York, NY. Link
Vaz, A., Fonseca, P., Badotti, F., Skaltsas, D., Tomé, L.M., Silva, A., Cunha, M., Soares, M, Santos, V., Oliveira, G., Chaverri, P., Góes-Neto, A. A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon. 2018. Scientific Reports. 8:16151. DOI:10.1038/s41598-018-34619-w PDF
Oliveira, H.O., Castro, G.L.S., Correa, L.O., Silvestre, W.V.D., Nascimento, S.V., Valadares, R.B.S., Oliveira, G., Santos, R.I.N., Festucci-Buselli, R.A., Pinheiro, H.A. Coupling physiological analysis with proteomic profile to understand the photosynthetic responses of young açaí palm to drought. 2018. Journal Photosynthesis Research. Accepted. PDF
Almeida, S.F., Silva, L.R.C., Chagas-Junior, G.C.A., Oliveira, G., Silva, S.H.M., Vasconcelos, S., Lopes, A.S. Diversity of yeasts during fermentation of cocoa from two sites in the Brazilian Amazon. 2018. Acta Amazonica. Acta Amazonica. 49(1):64-70. PDF
PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly.2018. BMC Bioinformatics. 19(297): 1-10. PDF
Herrera, H., Valadares, R., Oliveira, G., Fuentes, A., Almonacid, L., Bashan, Y., Arriagada, C. Adaptation and tolerance mechanisms developed by mycorrhizal Bipinnula fimbriata plantlets (Orchidaceae) in a heavy metal-polluted ecosystem. 2018. Mycorrhiza. Mycorrhiza. 28(7):651-663. PDF
Maldonado, L., Stegmayer, G., Milone, D., Oliveira, G., Rosenzvit, M., Kamenetzky, L. Whole genome analysis of codon usage in Echinococcus. 2018. Mol. Biochem. Parasitol. 225:54-66. PDF
Bosse, M., Heuwieser, A., Heinzel, A., Lukas, A., Oliveira, G., Mayer, B.. Biomarker panels for characterizing microbial community biofilm formation as composite molecular process. PLoS One. 13(8): e0202032. PDF
Souza, K.P., Setúbal, J.C., Carvalho, A.C.P.L.F., Oliveira, G., Chateau, A., Alves, R.C.O. Machine Learning Meets Genome Assembly. 2018. Briefings in Bioinformatics. Accepted. PDF
Nunes, G.L., Oliveira, R.R.M., Guimarães, J.T.F., Giulietti, A.M., Caldeira, C., Vasconcelos, S., Pires, E., Dias, M., Watanabe, M., Pereira, J., Jaffé, R., Bandeira, C.H.M.M., Carvalho-Filho, N., Silva, E.F., Rodrigues, T.M., Santos, F.M.G., Fernandes, T., Castilho, A., Souza-Filho, P.W.M., Imperatriz-Fonseca, V., Siqueira, J.O., Alves, R., Oliveira, G. Quillworts from the Amazon: a multidisciplinary populational study on Isoetes serracarajensis and Isoetes cangae. PLoS One. 13(8): e0201417. PDF
Ramalho, A.J, Zappi, D.C., Nunes, G.L., Watanabe, M.T.C., Vasconcelos, S., Dias, M.C., Jaffé, R., Prous, X., Giannini, T.C., Oliveira, G., Giulietti, A.M. Blind testing: DNA barcoding sheds light upon the identity of plant fragments as a subsidy for cave conservation. 2018. Frontiers in Plant Science. 9:1052. PDF
Lanes, E., Pope, N.S., Alvez, R., Carvalho-Filho, N.M., Giannini, T.C., Giulietti, A.M., Imperatriz-Fonseca, V.L., Monteiro, W., Oliveira, G., Silva, A.R., Siqueira, J.O., Souza-Filho, P.M.W., Vasconcelos, S., Jaffé, R. Landscape genomic conservation assessment of a narrow-endemic and a widespread morning glory from Amazonian savannas. 2018. Frontiers Plant Science. 9:532. PDF
Nascimento, S.V., Magalhães, M.M., Cunha, R.L., Costa, P.H.O., Alves, R.C.O., Oliveira, G., Valadares, R. Differential accumulation of proteins in oil palms affected by Fatal Yellowing disease. 2018. PLoS One. 13(4): e0195538. PDF
Santos, V.C.A., Correa, L., Meiguins, B., Oliveira, G., Alves, R. Metagenomics-based signature pattern cluster and interactive visualization analysis. 2018. IEEE IJCNN Conference Proceedings. Accepted.
Castro, A.C.H., Kochi, L., Moço, A.C.R., Coimbra, R.S., Oliveira, G., Cuadros-Orellana, S., Madurro, J.M., Brito-Maduro, A.G. A new genosensor for meningococcal meningitis diagnosis using biological samples. 2018. Journal of Solid State Electrochemistry. Online 1-8. PDF
Jaffé, R., Prous, X., Calux, A., Gastauer, M., Nicacio, G., Souza-Filho, P.W.M., Imperatriz-Fonseca, V.L., Oliveira, G., Brandi, I.V., Siqueira, J.O. Conserving relics from ancient underground worlds: Assessing the influence of cave and landscape features on obligate subterranean dwellers from the Eastern Amazon. 2018. PeerJ. 6:e4531. PDF
Radio, S., Fontenela, S., Solana, Salim, A.C.M., Araújo, F.M.G., Ortiz, P., Hoban, C. Miranda, E., Gayo, V., Pais, F.S.M., Solana, H., Oliveira, G. Smircich, P., Tort, P. Pleiotropic alterations in gene expression in Latin American Fasciola hepatica isolates with different susceptibility to drugs. 2018. Parasites & Vectors. 11(56):1-11.PDF
Oliveira, R.R.M., Pires, E.S., Vasconcelos, S., Pietrobon, T., Prous, X., Oliveira, G. Complete mitochondrial genome of Glomeridesmus spelaeus (Diplopoda), a troglobitic species from Carajas iron-ore caves (Para, Brazil). bioRxiv. 2018. PDF
2017
Giulietti, A.M., Oliveira, G., Jaffé, R. O fim desta viagem / The end of this In: Paisagens e Plantas de Carajás / Landscapes and Plants of Carajás. ed. Instituto Tecnológico Vale, 2017, v.1, p. 221-231. PDF
Cuesta-Astroz, Y., Santos, A., Oliveira, G., Jensen, L.J. An integrative method to unravel the host-parasite interactome: an orthology-based approach. 2017. bioRxiv. PDF
Nancucheo, I., Bittencourt, J., Sahoo, P.K., Alves, J.O., Siqueira, J.O., Oliveira, G. Recent developments for remediating acidic mine waters using sulfidogenic bacteria. 2017. BioMed Research International. 2017:1-17. PDF
Pádua, F.; Castro, A.; Silva, J.; Oliveira, G.; Cuadros, S.; Madurro, J.; Brito-Madurro, A. A novel polymer-based genosensor for the detection and quantification of Streptococcus pneumoniae in genomic DNA sample. 2017. Polymer Engineering & Science. Accepted.
Nancucheo, I., Johnson, D.B., Lopes, M., Oliveira, G. Reductive Dissolution of a Lateritic Ore Containing Rare Earth Elements (REE) Using Acidithiobacillus Species. 2017. Solid State Phenomena. 262: 299-302. PDF
Figueiró, H.V., Li, G., Trindade, F.J., Assis, J., Pais, F., Fernandes, G., Santos, S.H.D., Hughes, G.M., Komissarov, A., Antunes, A., Trinca, C.S., Rodrigues, M.R., Linderoth, T., Bi, K., Silveira, L., Azevedo, F.C.C., Kantek, D., Ramalho, E., Barrasaloti, R.A., Villela, P.M.S., Nunes, A.L.V., Teixeira, R.H.F., Morato, R.G., Loska, D., Saragueta, P., Gabaldón, T., Teeling, E.C., O’Brien, S.J., Nielsen, R., Coutinho, L.L., Oliveira, G., Murphy, W.J., Eizirik, E. Genome-wide signatures of complex introgression and adaptive evolution in the big cats. 2017. Science Advances. 3(7): e1700299. PDF
Medeiros, J.D., Leite, L.R., Pylro, V.S., Silva, F., Mendes, V., Fernandes, G.R., Salim, A.C., Araújo, F., Volpini, A.C., Oliveira, G., Cuadros-Orellana, S. Single-cell sequencing reveals metal-adapted strains and the effect of phage predation on the microevolution of Chitinophagaceae in acid mine drainage. 2017. Molecular Ecology. 5541-5551. PDF
Babiychuk, E., Kushnir, S., Vasconcelos, S., Dias, M.C., Carvalho-Filho, N., Nunes, G.L., Santos, J.F., Tyski, L., Silva, D.F., Castilho, A., Fonseca, V.L.I., Oliveira, G. Natural history of the narrow endemics Ipomoea cavalcantei and I. marabaensis from Amazon Canga savannahs. 2017. Scientific Reports. 7:7493. PDF
Jeremias, W.J., Araújo, F.M.G., Queiroz, F.R., Pais, F.S.M., Mattos, A.C.A., Coelho, P.M.Z.C., Oliveira, G., Kusel, J.R., Guerra-Sá, J.R., Coimbra, R.S., Babá, E.H. Comparative sequence analysis reveals regulation of genes in developing schistosomula of Schistosoma mansoni exposed to host portal serum. 2017. PLoS One. E 12(6): e0178829. PDF
Adema, C.M; Hillier, L.W; Jones, C.S.; Loker, E.S.; Knight, M.; Minx, P.; Oliveira, G.; Raghavan, N.; Shedlock, A.; do Amaral, L.R.; Arican-Goktas, H.D.; Assis, J.G.; Baba, E.H.; Baron, O.L.; Bayne, C.J.; Bickham-Wright, U.; Biggar, K.K.; Blouin, M.l; Bonning, B.C.; Botka, C.; Bridger, J.M.; Buckley, K.M.; Buddenborg, S.K.; Lima Caldeira, R.; Carleton, J.; Carvalho, O.S.; Castillo, M.G.; Chalmers, I.W.; Christensens, M.; Clifton, S.; Cosseau, C.; Coustau, C.; Cripps, R.M.; Cuesta-Astroz, Y.; Cummins, S.F.; di Stephano, L.; Dinguirard, N.; Duval, D.; Emrich, S.; Feschotte, C.; Feyereisen, R.; FitzGerald, P.; Fronick, C.; Fulton, L.; Galinier, R.; Gava, S.G.; Geusz, M.; Geyer, K.K.; Giraldo-Calderón, G; de Souza Gomes, M.; Gordy, M.A.; Gourbal, B.; Grunau, C.; Hanington, P.C.; Hoffmann, K.F.; Hughes, D.; Humphries, J.; Jackson, D.J.; Jannotti-Passos, L.K.; de Jesus Jeremias, W.; Jobling, S.; Kamel, B.; Kapusta, A.; Kaur, Satwant; Koene, JM.; Kohn, AB.; Lawson, D.; Lawton, SP; Liang, D.; Limpanont, Y.; Liu, S.; Lockyer, A.E.; Lovato, T.L.; Ludolf, F.; Magrini, V.; McManus, D.P.; Medina, M.; Misra, M.; Mitta, G.; Mkoji, G.M.; Montague, M.J.; Montelongo, C.; Moroz, L.L.; Munoz-Torres, M.C.; Niazi, U.; Noble, L.R.; Oliveira, F.S.; Pais, F.S.; Papenfuss, A.T.; Peace, R.; Pena, J.J.; Pila, E.A.; Quelais, T.; Raney, B.J.; Rast, J.P.; Rollinson, D.; Rosse, I.C.; Rotgans, B.; Routledge, E.J.; Ryan, K.M.; Scholte, L.L. S.; Storey, K.B.; Swain, M.; Tennessen, J.A.; Tomlinson, C.; Trujillo, Da.L.; Volpi, E.V.; Walker, A.J.; Wang, T.; Wannaporn, I.; Warren, W.C.; Wu, X.; Yoshino, T.P.; Yusuf, M.; Zhang, S.; Zhao, M.; Wilson, R.K. 2017. Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nature Communications. 8:15451. PDF
Siniscalchi, L.A.b., Leite, L.R., Oliveira, G., Chernicharo, C.A.L., Araújo, J.C. Illumina sequencing-based analysis of a microbial community enriched under anaerobic methane oxidation condition coupled to denitrification revealed coexistence of aerobic and anaerobic methanotrophs. 2017. Environmental Science and Pollution Research. 24(20):16751-16764. PDF
Scholte, L., Mourão, M.M., Pais, F., Melesina, J., Robaa, D., Volpini, A.C., Sippl, W., Pierce, R.J., Oliveira, G., Nahum, L. Evolutionary relationships among protein lysine deacetylases of parasites causing neglected diseases. 2017. Infection, Genetics and Evolution. 53:175-188.
Gava, S.G., Paula, N.C.C.S.T., Salim, A.C.M., Araújo, F.M.G., Oliveira, G., Mourão, M. Schistosoma mansoni: off-target analyses using nonspecific double-stranded RNAs as control for RNAi experiments in schistosomula. 2017. Experimental Parasitology. 177:98-103. PDF
Badotti, F., Garcia, C.F., Vaz, A.B.M., Fonseca, P.L.C., Nahum, L.A., Oliveira, G., Góes-Neto, A. Effectiveness of ITS and sub-regions as DNA barcode markers for the identification of Basidiomycota (Fungi). 2017. BMC Microbiology. Accepted.
Maldonado, L.L.; Assis, J.; Araújo, F.M.G.; Salim, A.C.M.; Macchiaroli, N.; Cucher, M.; Camicia, F.; Fox, A.; Rosenzvit, M.; Oliveira, G.; Kamenetzky, L. The Echinococcus canadensis (G7) genome: a key knowledge of parasitic plathyhelmith human diseases. 2017. BMC Genomics. 18:204. PDF
Cuesta-Astroz , Y., Oliveira, F.S., Nahum, L.A., Oliveira, G. Helminth secretomes reflect different lifestyles and parasitized hosts. Int. J. Parasitology. 2017. 47:529-544. PDF
Vaz, A.B.M., Fonseca, P.L.C., Leite, L.R., Badotti, F., Salim, A.C.M., Araújo, F.M.G., Cuaros-Orellana, S., Duarte, A.A., Rosa, C.A., Oliveira, G., Góes-Neto, A. Using Next-Generation Sequencing (NGS) to uncover diversity of wood-decaying fungi in neotropical atlantic forests. 2017. Phytotaxa. 295(1):1-21. PDF
Rozas, E., Mendes, M.A., Nascimento, C.A.O., Espinosa, D.C., Oliveira, R., Oliveira, G., Custodio, M.R. Bioleaching of electronic waste using bacteria isolated from the marine sponge Hymeniacidon heliophila (Porifera). 2017. Journal of Hazardous Materials. 329:120-130. PDF
Rosse, I.C., Assis, J.G., Oliveira, F.S., Leite, L.R., Araújo, F., Zerlotini, A., Volpini, A., Dominitini, A.J., Lopes, B.C., Arbex, W.A., Machado, M.A., Peixoto, M.G.C.D., Verneque, R.S., Martins, M.F., Coimbra, R.S., Silva, M.V.G.B, Oliveira, G., Carvalho, M.R.S. Whole-genome sequencing of Guzerá cattle: SNPs and INDELs in genes associated with production traits, disease resistance and heat tolerance. 2017. Mammalian Genome. 28(1-2):66-80. PDF
2016
Jaffé, R., Prous, X., Giannini, T.C., Imperatriz-Fonseca, V.L., Maurity, C., Oliveira, G., Zampaulo, R., Siqueira, J.O. (2016) Reconciling mining with the conservation of cave biodiversity: A quantitative baseline to help establish conservation priorities. PLoS One. 11(12): e0168348. PDF
Book Chapter: Tavares, N.C., Aguiar, P.H.N., Gava, S.G., Oliveira, G., Mourão, M.M. (2016). Schistosomiasis: Setting Routes for Drug Discovery, Special Topics in Drug Discovery, Dr. Taosheng Chen (Ed.), InTech, DOI: 10.5772/65386. Available here.
Martins, A.S., Ferreira, B.O., Ribeiro, N.C., Martins, R., Leite, L.R., Oliveria, G., Colturato, L.F., Chernicharo, C.A., Araújo, J.C. Metagenomic analysis and performance of a mesophilic aerobic reactor treating food waste at various load rates. 2016. Environmental Technology. In Press. PDF
Santana, R.S.M., Fernandes, G.W., Ávila, M.P., Reis, M.P., Araújo, F.M.G., Salim, A.C., Oliveira, G., Chartone-Souza, E., Nascimento, A.M.A. Endophytic Microbiota Associated with the Root Tips and Leaves of Baccharis dracunculifolia. Braz. Arch. Biol. Technol. 59: e16160287. PDF
Reis, E.P,. Paixão, D.M., Brustoini, O.J.B., Silva, F.F., Silva, W., Araújo, F.M.G., Salim, A.C.M., Oliveira, G., Guimarães, S.E.F. Expression of myogenes in longissimus dorsi muscle during prenatal development in commercial and local Piau pigs. 2016. Genetics and Molecular Biology. 39(4):589-599. PDF
Magalhães, D., Scholte, L.L.S., Silva, N.V., Oliveria, G.C., Zipfel, C., Takita, M.A., Souza, A.A. LRR-RLK Family from two Citrus species: Genome-wide identification and evolutionary aspects. 2016. BMC Genomics. 17:623. PDF
Semenchenko, A., Oliveira, G., Atman, A.P.F. Hybrid agent-based model for quantitative in-silico cell-free protein synthesis. 2016. BioSystems. 150:22–34. PDF
Pylro, V., Morais, D.K., Oliveira, F.S., Santos, F.G., Lemos, L.N., Oliveira, G., Roesch, L.F.W. Brazilian Microbiome Project OS: The most flexible and user-friendly tool sets for microbiome studies. 2016. Microbial Ecology. 72:443-447. PDF
Leite, L., Medeiros, J., Fernandes, G., Araújo, F.M.G., Pylro, V., Salim, A., Volpini, A., Oliveira, G., Cuadros-Orellana, S. Draft Genome Sequence of Hydrotalea flava strain CCUG 51397 (T). 2016. Genome Announcement. 4(3): e00527-16. PDF
Holanda, R., Hedrich, S., Ñancucheo, I., Oliveira, G., Grail, B.M., Johnson, D.B. Isolation and characterisation of mineral-oxidizing “Acidibacillus” spp. from mine sites and geothermal environments in different global locations. 2016. Research in Microbiology. 167:613-623. PDF
Assis, R.R., Ludolf, F., Nakajima, R., Jasinskas, A., Oliveira, G.C., Felgner, P.L., Gaze, S.T., Loukas, A., LoVerde, P.T., Bethony, J.M., Correa-Oliveira, R., Calzavara-Silva, C.E. Next-generation proteome array for Schistosoma mansoni: determining the immunome of schistosomiasis. 2016. International Journal for Parasitology. 26:411-415. PDF
Reis, M.P, Dias, M.F., Costa, P.S., Ávila, M.P., Leite, L.R., Araújo, F.M.G., Salim, A.C., Bucciarelli-Rodriguez, M., Oliveria, G., Chartone-Souza, E., Nascimento, A.M.A. Metagenomic signatures of a tropical mining-impacted stream reveal complex microbial and metabolic networks. 2016. Chemosphere. 161:266-273.
Ñancucheo, I., Oliveira, R., Dall'Agnol, H., Johnson, B., Grail, B., Holanda, R., Nunes, G.L., Orellana, S.C., Oliveira, G. Draft Genome Sequence of a Novel Species of Acidophilic Iron-oxidizing Firmicutes, “Acidibacillus ferrooxidans” (SLC66T). Genome Announcements. 2016. 4(3): e00383-16. PDF
Chevalier, F.D., Clec'h, W.L., Enga, N., Rugel, A.R., Assis, R.R., Oliveira, G., Holloway, S.P., Cao, S., Hart, P.J., LoVerde, R.T., Anderson, T.J.C. Independent 1 origins of loss-of-function mutations conferring oxamniquine resistance in a Brazilian schistosome population. International Journal for Parasitology. 2016. 46:417-424. PDF
Zukurov, J.P., Nascimento-Brito, S., Volpini, A., Oliveira, G., Janini, L.M.R., Antoneli, F. Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage. Algorithms for Molecular Biology. 2016. 2016. 11(2):1-15. PDF
Dall'Agnol, H., Ñancucheo, I., Johnson, B., Oliveira, R., Leite, L., Pylro, V., Holanda, R., Grail, B., Carvalho, N., Nunes, G.L., Tzotzos, G., Fernandes, G.R., Dutra, J., Orellana, S.C., Oliveira, G. Draft genome sequence of “Acidibacillus ferrooxidans” ITV01, a novel acidophilic Firmicute isolated from a chalcopyrite mine drainage site in Brazil. 2016. Genome Announcement. 4(2): e01748-15. PDF
Dias, M.F., Colturato, L.F., Oliveira, J.P., Leite, L.R., Oliveira, G., Chernicharo, C.A., Araújo, J.C. Metagenomic analysis of a desulphurisation system used to treat biogas from 1 vinasse methanisation. 2016. Bioresource Technology. 205:58-66. PDF
Silva, D.M., Silva, M.P., Vidigal, P.M., Oliveira, G.C., Ribon, A.O.B. Draft genome sequences of Staphylococcus aureus strains isolated from subclinical bovine mastitis in Brazil. 2016. Genome Announcements. 4(1):e01594-15. PDF
2015
Laguardia-Nascimento, M., Branco, K.M.G.R., Gasparini, M.R., Giannattasio-Ferraz, S., Araujo, F.M.G., Nicoli, J.R., Oliveira, G., Barbosa-Stancioli, E.F. Vaginal microbiome characterization of nellore cattle using metagenomic analysis. 2015. PLoS One. 10(11): e0143294. PDF
Rodrigues, L.P., Ferreira, D.C., Ferreira, Cuadros-Orellana, S., Oliveira, G.C., Brito-Madurro, A.G., Oliveira, R.J., Abrahão Jr., Odonírio, Madurro, J.M. Electropolymerization of hydroxyphenylacetic acid isomers and the development of a bioelectrode for the diagnosis of bacterial meningitis. 2015. Journal of Applied Eletrochemistry. 45:1277-1287. PDF
Valdivia, H.O., Scholte, L.L.S., Oliveira, G., Gabaldon, T., Bartholomeu, D.C. Phylogenomics of six Leishmania species reveals lineage-specific gene family expansions driving parasite adaptation. 2015. BMC Genomics. 16:887. PDF
Nascimento-Brito, S., Zukurov, J.P., Maricato, J.T., Volpini, A.C., SalimA.C., AraújoF.M.G., Coimbra, R.S., Oliveira, G., Antoneli, F., Janini. L.M.R. HIV-1 Tropism determines different mutation profiles in proviral DNA. 2015. PLoS One. 10(9):e0139037. PDF
Almeida, G.T., Lage,R.C.G., Anderson. L., Venancio, T.M., Nakaya, H.I., Miyasato, P.A., Rofatto, H.K., Zerlotini, A., Nakano, E., Oliveira, G., Verjovski-Almeida, S. Synergy of omeprazole and praziquantel in vitro treatment against Schistosoma mansoni adult worms. 2015, PLoS NTD. 9(9): e0004086. PDF
Kehdy, F.S.G , Gouveia, M.H., Magalhães, W.C.S., Hormoto, A.R., Horta, B.L., Moreira, R.G., Leal, T.P., Scliar, M.O., Soares-Souza, G.B., Rodrigues-Soares, F., Araújo, G.S., Zamudio, R., Anna, H.P.S., Santos, H.C., Duarte, N.E., Fiaconne, R.L., Figueiredo, C.A., Silva, T.M., Costa, G.N.O., Beleza, S., Berg, D.E., Cabrera, L., Debortoli, G, Duarte, D., Ghirotto, S., Gilman, R.H., Gonçalves, V.F., Marrero, A.R., Muniz, Y.C., Weissensteiner, H., Yeager, M., Rodrigues, L.C., Barreto, M.L., Lima-Costa, F., Pereira, A.Cc, Rodrigues, M.R., Tarazona-Santos, E., EPIGEN Project Consortium. Origin and dynamics of admixture in Brazilians and its effect on the pattern of deleterious mutations. Proceedings of the National Academy of Sciences of the United States of America. 2015. (author as member of the EPIGEN Project Consortium). 112(28):8696-8701. PDF
Medeiros, J.D., Leite, L.R., Cuadros-Orellana, S., Oliveira, G. Taxonomic and functional diversity of microbial community from a mining environment. BMC Bioinformatics. 2015 16(Suppl 8):A3. PDF
Cordeiro, A.P., Pereira, R.A.S., Chapeaurouge, A., Coimbra, C.S., Perales, J., Oliveira, G., Candiani, T.M.S., Coimbra, R.S. Comparative proteomics of cerebrospinal fluid reveals a predictive model for differential diagnosis of pneumococcal, meningococcal, and enteroviral meningitis, and novel putative therapeutic targets. BMC Genomics 2015, 16(Suppl 5):S11. PDF
Chakrabarti, A., Oehme, I., Witt, O., Oliveira, G., Sippl, W., Romier, C., Pierce, R.J., Jung, M. HDAC8, a multifaceted target for therapeutic interventions. Trends in Pharmacological Sciences. 2015. 36(7):481-492. PDF
Marek, M., Oliveira, G., Pierce, R.J., Jung, M., Sippl, W., Romier, C. Drugging the schistosome zinc-dependent HDACs: current progress and future perspectives. Future Medicinal Chemistry. Special Focus Issue: Schistosomiasis, 2015. 7(6), 783-800. PDF
Palhares, R., Drummond, M., Brasil, B., Cosenza, G., Brandão, M.G., Oliveira, G. Medicinal plants recommended by the World Health Organization: DNA barcode identification associated with chemical analyses guarantees their quality. PLoS One, 2015. 10(5):e0127866. PDF
Oliveira, G., Pierce, R.J. How has the genomics era impacted schistosomiasis drug discovery? Future Medicinal Chemistry, 2015. 7(6):685-687. PDF
Costa, P.S., Reis, M.P., Leite, L.R., Araújo, F.M.G., Salim, A.C.M., Oliveira, G., Barbosa, F., Chartone-Souza, E., Nascimento, A.M.A. Metagenome of microbial a community inhabiting the metal-rich tropical stream sediment. PLoS One, 2015. 10(3): e0119465. PDF
Pereira, U.P., Bonetti, A.M., Goulart, L.R., Santos, A.R., Oliveira, G.C., Cuadros-Orellana, S., Ueira-Vieira, C. Complete mitochondrial genome sequence of Melipona scutellaris, a Brazilian stingless bee. Mitochondrial DNA. 2015. Early Online 1-2. PDF
2014
Grossmann, S.M.C., De Oliveira, G.C., Teixeira, R., Vieira do Carmo, M.A. Stimulated And Non-Stimulated Salivary Flows Should Be Tested For The Presence Of HCV RNA In Saliva Samples From Patients With Chronic Hepatitis C. Dentistry. 4(5):232. PDF
Cabezas-Cruz, A., Lancelot, J., Caby, S., Oliveira, G., Pierce, R.J. Epigenetic control of gene function in schistosomes: a source of therapeutic targets? Front. Genet. Evolutionary and Genomic Microbiology, 2014. 5:317. PDF
Carvalho, W.A., Domingues, R., Prata, M.C.A., Silva, M.G.V.B., Oliveira, G.C., Guimarães, S.E.F, Machado, M.A. Microarray analysis of tick-infested skin in resistant and susceptible cattle confirms the role of inflammatory pathways in immune activation and larval rejection. Veterinary Parasitology. 2014. 205:307–317. PDF
Wan, D., Ludolf, F., Alanine, D.G.W., Stretton, O., Ali, E.A., Al-Barwary, N., Wang, X., Doenhoff, M.J., Mari, A., Fitzsimmons, C.M., Dunne, D.W., Nakamura, R., Oliveira, G.C., Alcocer, M.J.C., Falcone, F.H. Use of humanised rat basophilic leukaemia cell line RS-ATL8 for the assessment of allergenicity of Schistosoma mansoni proteins. PloS NTD. 2014. 8(9): e3124. PDF
Palhares R.M., Drummond, M.G., Brasil, B.S., Krettli, A.U., Oliveira, G.C., Brandão, M.G. The use of an integrated molecular-, chemical- and biological-based approach for promoting the better use and conservation of medicinal species: A case study of Brazilian quinas. J Ethnopharmacol. 2014. (155) 815-822. PDF
Cuesta-Astroz, Y., Scholte, L.L.S., Pais, F.S., Oliveira, G., Nahum, L.A. Evolutionary analysis of the cystatin family in three Schistosoma Species. Frontiers in Genetics, section Evolutionary and Genomic Microbiology. 2014. Front Genet. 2014 Jul 9(5):206. PDF
Andrade, L.F., Mourão, M.M., Geraldo, J.A., Silva, L.L., Neves, R.H., Vo;ini, A., Machado-Silva, J.R., Araújo, N., Nacif-Pimenta, R., Caffrey, C.R., Oliveira, G. Regulation of Schistosoma mansoni development and reproduction by the Mitogen-Activated Protein Kinase Signaling Pathway. PLoS Neglected Tropical Diseases. 2014, 8(6): e2949. PDF
Silverio, M.S., Rodovalho, V.R., Bonetti, A.M., Oliveira, G., Cuadros-Orellana, S., Ueira-Vieira, C., Santos, A.R. Preliminary characterization of the mitochondrial genome of Melipona scutellaris, a Brazilian stingless bee. BioMed Resaerch International. 2014. Article ID 927546. PDF
Gava, S.G., Scholte, L.L.S., Oliveira, R.P., Oliveira, G. Heterologous Expression in Caenorhabditis elegans as an Alternative Approach to Functional Studies in Schistosoma mansoni. Front. Genet. 2014. 5:1-5. PDF
Pais, F.S., Ruy, P.C., Oliveira, G., Coimbra, R.S. Assessing the efficiency of multiple sequence alignment programs. Algorithms for Molecular Biology. 2014, 9:4. PDF
Oliveira, G. Cancer and parasitic infections: similarities and opportunities for the development of new control tools. Revista da Sociedade Brasileira de Medicina Tropical. 2014. 47(1):1-2. PDF
Gaze, S., Driguez, P., Pearson, M.S., Mendes, T., Doolan, D.L., Trieu, A., McManus, D.P., Gobert, G., Correa Oliveira, R., Cardoso, F.C., Oliveira, G., Nakajima, R., Jasinskas, A., Hung, C., Liang, L., Pablo, J., Bethony, J.M., Felgner, P.L., Loukas, A. The Schistosoma mansoni antibody immunomes for naturally resistant and chronically infected people. PLoS Pathogens. 2014. 10:e1004033. PDF
Ludolf, F., Patrocínio, P., Correa-Oliveira, R., Gazzinelli, A., Falcone, F.H., Teixeira, A., Perales, J., Oliveira, G., Silva-Pereira, R. A. Serological screening of the Schistosoma mansoni adult worm proteome. PLoS NTD. 2014. s 8(3): e2745. PDF
Batista, D.F.A., Freitas Neto, O.C., Leite, L.R., Varani, A.M., Araujo, F.M.G., Almeida, A.M., Ribeiro, S.A.M., Oliveira, G., Barrow, P.A., Berchieri Junior, A. Draft Genome Sequence of Salmonella enterica subspecies enterica serovar Gallinarum biovar Pullorum Strain FCAV198, a Brazilian chicken pathogen. Genome Announcements. 2014. 2(1):e00028-14. PDF
2013
Coeli, R., Baba, E.H., Araujo, N.,. Coelho, PMCZ., Oliveira, G. Praziquantel Treatment Decreases Schistosoma mansoni. PLoS Neglected Tropical Diseases. 2013. 7(12): e2596. PDF
Gurgel-Giannetti, J., Oliveira, G., Brasileiro Filho, G., Martins, P., Vainzof, M., Hirano, M. Mitochondrial cardioencephalomyopathy due to a novel SCO2 mutation in a Brazilian patient. JAMA Neurology. 2013, 70(2):258-261. PDF
Cuadros-Orellana, S., Leite, L.R., Smith, A., Medeiros, J.D., Badotti, F., Fonseca, P.L.C., Vaz, A.B.M., Oliveira, G., Góes-Neto, A. Assessment of fungal diversity in the environment using metagenomics: a decade in review. Fungal Genomics and Biology. 2013. 3(2):110. PDF
Marek, M., Kannan, S., Hauser, A, Mourão, M.M., Caby, S., Cura, V., Stolfa, D.A., Schmidtkunz, K., Lancelot, J., Renaud, J., Oliveira, G., Sippl, W., Jung, M., Cavarelli, J., Pierce, R.J., Romier, C. Structural Basis for the Inhibition of Histone Deacetylase 8 (HDAC8), a Key Epigenetic Player in the Blood Fluke Schistosoma mansoni. PLoS Pathogens. 2013. 9 (9):|e1003645. PDF
Lancelot, J., Caby, S., Dubois-Abdesselem, F., Vanderstraete, M., Trolet, J., Oliveira, G., Bracher, F., Jung, M., Pierce, R.J. Schistosoma mansoni sirtuins: characterization and potential as chemotherapeutic targets. PLoS Neglected Tropical Diseases. 7(9):e2428. PDF
Glenn, T.C., Lance, S.L., McKee, A.M. Webster, B.L., Emery, A.M., Zerlotini, A., Oliveira, G., Rollinson, D., Faircloth, B.C. Significant variance in genetic diversity among populations of Schistosoma haematobium detected using microsatellite DNA loci from a genome-wide database. Parasite & Vectors. 2013. 6:300. PDF
Thiele, E.A, Oliveira, G., Gazzinelli, A., Minchella, D.J. Elucidating the temporal and spatial dynamics of Biomphalaria glabrata genetic diversity in three Brazilian villages. Tropical Medicine & International Health. 2013. 18(10):1164-73.
Pereira, U.P., Santos, A.R., Hassan, S.S., Abjurjaile, F.F., Soares, S., Ramos, R.T.J., Carneiro, A.R., Guimarães, L.C., Almeida, S.S., Diniz, C.A.A., Barbosa, M.S., Sá, P.G., Ali, A., Bakhtiar, S.M., Dorella, F.A., Zerlotini, A., Araújo, F.M.G., Leite, L.R., Oliveira, G., Miyoshi, A., Silva, A., Azevedo, V., Figueiredo, H.C.P. Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks. Standards in Genomic Sciences. 2013, 8(2):, 188-197. PDF
Ricardo J.P.S. Guimarães, Corina C. Freitas, Luciano V. Dutra, Guilherme Oliveira and Omar S. Carvalho (2013). Multiple Regression for the Schistosomiasis Positivity Index Estimates in the Minas Gerais State - Brazil at Small Communities and Cities Levels, Parasitic Diseases - Schistosomiasis, Rashika El Ridi (Ed.), ISBN: 978-953-51-0942-6, InTech. PDF
Badotti, F., Vaz, A., Fonseca, P., Leite, L., Araújo, F., Salim, A., Cuadros, S., Oliveira, G., Góes-Neto, A. Fungal diversity in lignocellulosic woody plant residues from a neotropical rainforest fragment: a metagenomics approach. Páginas 106-111. Anais [do] 64º Congresso Nacional de Botânica: botânica sempre viva e XXXIII ERBOT Encontro Regional de Botânicos MG, BA e ES. Organizadores João Renato Stelmann ... [et al.]. – Belo Horizonte : Sociedade Botânica do Brasil, 2013. PDF